Protein: ZC3HD
Zinc finger CCCH domain-containing protein 13

Gene: ZC3HD, ZC3H13
Organism: Homo sapiens
Interactions: 148
UniProt ID: Q5T200

Gene Ontology (top 5):
GO:0003723 - RNA binding
GO:0005634 - nucleus
GO:0005654 - nucleoplasm
GO:0006397 - mRNA processing
GO:0008270 - zinc ion binding

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

1099386

SRSF6
Serine/arginine-rich splicing factor 6

1

5

High-throughput

0.691

High

1212017

PABP5
Polyadenylate-binding protein 5

1

5

High-throughput

0.691

High

1211993

A16L1
Autophagy-related protein 16-1

2

20

High-throughput

0.675

High

1212001

ZCH18
Zinc finger CCCH domain-containing protein 18

3

20

High-throughput

0.667

High

1212004

CBLL2
E3 ubiquitin-protein ligase CBLL2

3

9

High-throughput

0.667

High

889751

CLK3
Dual specificity protein kinase CLK3

2

20

High-throughput

0.628

High

285326

EED
Polycomb protein EED

1

20

High-throughput

0.618

High

472802

RU17
U1 small nuclear ribonucleoprotein 70 kDa

1

10

High-throughput

0.618

High

485193

ROA1
Heterogeneous nuclear ribonucleoprotein A1

1

7

High-throughput

0.618

High

685603

U2AF2
Splicing factor U2AF 65 kDa subunit

1

8

High-throughput

0.618

High

1145471

RBBP5
Retinoblastoma-binding protein 5

1

20

High-throughput

0.618

High

1212000

THOC4
THO complex subunit 4

1

4

Small-scale

0.618

High

1212006

NUP43
Nucleoporin Nup43

1

20

High-throughput

0.618

High

1212016

SNR40
U5 small nuclear ribonucleoprotein 40 kDa protein

1

20

High-throughput

0.618

High

1212047

NLE1
Notchless protein homolog 1

1

16

High-throughput

0.618

High

1211994

VIR
Protein virilizer homolog

2

6

High-throughput

0.611

High

966430

1433G
14-3-3 protein gamma

2

20

High-throughput

0.601

High

1212058

MED16
Mediator of RNA polymerase II transcription subunit 16

1

0

High-throughput

0.586

High

134767

SAP18
Histone deacetylase complex subunit SAP18

2

0

High-throughput

0.585

High

1121793

EIF3A
Eukaryotic translation initiation factor 3 subunit A

2

19

High-throughput

0.584

High

1144019

TEBP
Prostaglandin E synthase 3

2

0

High-throughput

0.576

High

1212033

GAN
Gigaxonin

2

5

High-throughput

0.558

High

1212051

WSB2
WD repeat and SOCS box-containing protein 2

1

20

High-throughput

0.553

High

997774

CSK21
Casein kinase II subunit alpha

1

10

High-throughput

0.550

High

1049382

1433F
14-3-3 protein eta

2

20

High-throughput

0.549

High

158654

TYB4Y
Thymosin beta-4, Y-chromosomal

1

2

High-throughput

0.536

High

272679

BRE1B
E3 ubiquitin-protein ligase BRE1B

1

19

High-throughput

0.536

High

807457

IF4A3
Eukaryotic initiation factor 4A-III

1

7

High-throughput

0.536

High

832314

ID1
DNA-binding protein inhibitor ID-1

1

1

High-throughput

0.536

High

948538

APC15
Anaphase-promoting complex subunit 15

1

2

High-throughput

0.536

High

1117568

NOG2
Nucleolar GTP-binding protein 2

1

2

High-throughput

0.536

High

1136443

FL2D
Pre-mRNA-splicing regulator WTAP

1

1

High-throughput

0.536

High

1142789

PEA15
Astrocytic phosphoprotein PEA-15

1

1

High-throughput

0.536

High

1211999

MTA70
N(6)-adenosine-methyltransferase catalytic subunit METTL3

1

6

High-throughput

0.536

High

1212012

EZH1
Histone-lysine N-methyltransferase EZH1

1

15

High-throughput

0.536

High

1212018

THOC1
THO complex subunit 1

1

2

High-throughput

0.536

High

1212037

MET14
N(6)-adenosine-methyltransferase non-catalytic subunit METTL14

1

6

High-throughput

0.536

High

1212038

CHD8
Chromodomain-helicase-DNA-binding protein 8

1

20

High-throughput

0.536

High

1130754

RRP5
Protein RRP5 homolog

1

2

High-throughput

0.515

High

277932

SH3L1
Adapter SH3BGRL

1

0

High-throughput

0.513

High

1212025

TCAL7
Transcription elongation factor A protein-like 7

1

0

High-throughput

0.513

High

691090

1433T
14-3-3 protein theta

1

20

High-throughput

0.501

High

889434

CLK1
Dual specificity protein kinase CLK1

1

20

High-throughput

0.501

High

1006459

SRPK2
SRSF protein kinase 2

1

18

High-throughput

0.501

High

169187

QCR10
Cytochrome b-c1 complex subunit 10

1

1

High-throughput

0.489

High

354017

CX001
Putative transmembrane protein CXorf1

1

1

High-throughput

0.489

High

515886

SAA1
Serum amyloid A-1 protein

1

1

High-throughput

0.489

High

592850

CBR1
Carbonyl reductase [NADPH] 1

1

2

High-throughput

0.489

High

1065841

MZT1
Mitotic-spindle organizing protein 1

1

1

High-throughput

0.489

High

1092768

MALL
MAL-like protein

1

1

High-throughput

0.489

High

1093753

GAGE5
G antigen 5

1

4

High-throughput

0.489

High

1178507

KI26B
Kinesin-like protein KIF26B

1

20

High-throughput

0.489

High

1196236

GAG2E
G antigen 2E

1

4

High-throughput

0.489

High

1212014

I27L1
Interferon alpha-inducible protein 27-like protein 1

1

1

High-throughput

0.489

High

1212044

TM14B
Transmembrane protein 14B

1

1

High-throughput

0.489

High

1212055

ANR50
Ankyrin repeat domain-containing protein 50

1

14

High-throughput

0.489

High

123727

MYO1C
Unconventional myosin-Ic

1

20

High-throughput

0.479

High

129161

MEN1
Menin

1

4

High-throughput

0.479

High

157477

CTRO
Citron Rho-interacting kinase

1

20

High-throughput

0.479

High

239583

MED14
Mediator of RNA polymerase II transcription subunit 14

1

11

High-throughput

0.479

High

260060

BRD4
Bromodomain-containing protein 4

1

16

High-throughput

0.479

High

390608

TFR1
Transferrin receptor protein 1

1

1

High-throughput

0.479

High

406265

MYCN
N-myc proto-oncogene protein

1

20

High-throughput

0.479

High

604680

UBF1
Nucleolar transcription factor 1

1

16

High-throughput

0.479

High

666844

CCNC
Cyclin-C

1

3

High-throughput

0.479

High

765606

BMI1
Polycomb complex protein BMI-1

1

20

High-throughput

0.479

High

786655

PP1G
Serine/threonine-protein phosphatase PP1-gamma catalytic subunit

1

14

High-throughput

0.479

High

879173

NR2C2
Nuclear receptor subfamily 2 group C member 2

1

12

High-throughput

0.479

High

897856

CDK9
Cyclin-dependent kinase 9

1

18

High-throughput

0.479

High

904819

MECP2
Methyl-CpG-binding protein 2

1

15

High-throughput

0.479

High

961047

MGN
Protein mago nashi homolog

1

2

High-throughput

0.479

High

979792

H4
Histone H4

1

14

High-throughput

0.479

High

984803

RL31
Large ribosomal subunit protein eL31

1

3

High-throughput

0.479

High

990320

1433Z
14-3-3 protein zeta/delta

1

20

High-throughput

0.479

High

1016925

H33
Histone H3.3

1

20

High-throughput

0.479

High

1045374

TF65
Transcription factor p65

1

8

High-throughput

0.479

High

1088391

CHD3
Chromodomain-helicase-DNA-binding protein 3

1

20

High-throughput

0.479

High

1093518

TRDN
Triadin

1

15

High-throughput

0.479

High

1108349

MED21
Mediator of RNA polymerase II transcription subunit 21

1

2

High-throughput

0.479

High

1113319

CUL3
Cullin-3

1

19

High-throughput

0.479

High

1128021

DHX8
ATP-dependent RNA helicase DHX8

1

8

High-throughput

0.479

High

1137338

SUZ12
Polycomb protein SUZ12

1

2

High-throughput

0.479

High

1141662

EEA1
Early endosome antigen 1

1

19

High-throughput

0.479

High

1149902

TERF2
Telomeric repeat-binding factor 2

1

7

High-throughput

0.479

High

1151253

MED1
Mediator of RNA polymerase II transcription subunit 1

1

16

High-throughput

0.479

High

1198567

NCBP3
Nuclear cap-binding protein subunit 3

1

1

High-throughput

0.479

High

1211992

RN123
E3 ubiquitin-protein ligase RNF123

1

13

High-throughput

0.479

High

1211996

TRI67
Tripartite motif-containing protein 67

1

20

High-throughput

0.479

High

1211998

MED25
Mediator of RNA polymerase II transcription subunit 25

1

1

High-throughput

0.479

High

1212002

DHX40
Probable ATP-dependent RNA helicase DHX40

1

8

High-throughput

0.479

High

1212003

SMC5
Structural maintenance of chromosomes protein 5

1

17

High-throughput

0.479

High

1212005

SERB1
SERPINE1 mRNA-binding protein 1

1

5

High-throughput

0.479

High

1212007

TNIP2
TNFAIP3-interacting protein 2

1

1

High-throughput

0.479

High

1212008

DOT1L
Histone-lysine N-methyltransferase, H3 lysine-79 specific

1

6

High-throughput

0.479

High

1212009

DNJC9
DnaJ homolog subfamily C member 9

1

2

High-throughput

0.479

High

1212011

ESR2
Estrogen receptor beta

1

20

High-throughput

0.479

High

1212013

MED12
Mediator of RNA polymerase II transcription subunit 12

1

6

High-throughput

0.479

High

1212023

MED15
Mediator of RNA polymerase II transcription subunit 15

1

9

High-throughput

0.479

High

1212024

ANM1
Protein arginine N-methyltransferase 1

1

7

High-throughput

0.479

High

1212026

DDX23
Probable ATP-dependent RNA helicase DDX23

1

7

High-throughput

0.479

High

1212027

CDK19
Cyclin-dependent kinase 19

1

19

High-throughput

0.479

High

1212028

PINK1
Serine/threonine-protein kinase PINK1, mitochondrial

1

10

High-throughput

0.479

High

1212031

UBE2O
(E3-independent) E2 ubiquitin-conjugating enzyme

1

6

High-throughput

0.479

High

1212036

HES4
Transcription factor HES-4

1

2

High-throughput

0.479

High

1212039

MED4
Mediator of RNA polymerase II transcription subunit 4

1

2

High-throughput

0.479

High

1212041

ANLN
Anillin

1

15

High-throughput

0.479

High

1212042

SIR7
NAD-dependent protein deacetylase sirtuin-7

1

16

High-throughput

0.479

High

1212043

RAD18
E3 ubiquitin-protein ligase RAD18

1

5

High-throughput

0.479

High

1212046

MED17
Mediator of RNA polymerase II transcription subunit 17

1

1

High-throughput

0.479

High

1212048

MED9
Mediator of RNA polymerase II transcription subunit 9

1

1

High-throughput

0.479

High

1212053

ZRAN1
Ubiquitin thioesterase ZRANB1

1

19

High-throughput

0.479

High

1212054

MED13
Mediator of RNA polymerase II transcription subunit 13

1

2

High-throughput

0.479

High

1212056

MED23
Mediator of RNA polymerase II transcription subunit 23

1

3

High-throughput

0.479

High

1212057

ASF1A
Histone chaperone ASF1A

1

3

High-throughput

0.479

High

1212030

RAB34
Ras-related protein Rab-34

1

7

High-throughput

0.470

High

48970

MED19
Mediator of RNA polymerase II transcription subunit 19

1

0

High-throughput

0.458

High

282387

MED24
Mediator of RNA polymerase II transcription subunit 24

1

0

High-throughput

0.458

High

287794

MED6
Mediator of RNA polymerase II transcription subunit 6

1

0

High-throughput

0.458

High

335998

MED26
Mediator of RNA polymerase II transcription subunit 26

1

0

High-throughput

0.458

High

667331

RPB1
DNA-directed RNA polymerase II subunit RPB1

1

0

High-throughput

0.458

High

722982

RPB2
DNA-directed RNA polymerase II subunit RPB2

1

0

High-throughput

0.458

High

1211995

MED27
Mediator of RNA polymerase II transcription subunit 27

1

0

High-throughput

0.458

High

1212019

MED8
Mediator of RNA polymerase II transcription subunit 8

1

0

High-throughput

0.458

High

1212021

MED30
Mediator of RNA polymerase II transcription subunit 30

1

0

High-throughput

0.458

High

1212032

MED28
Mediator of RNA polymerase II transcription subunit 28

1

0

High-throughput

0.458

High

1212035

MED20
Mediator of RNA polymerase II transcription subunit 20

1

0

High-throughput

0.458

High

1212049

MED29
Mediator of RNA polymerase II transcription subunit 29

1

0

High-throughput

0.458

High

883571

CENPA
Histone H3-like centromeric protein A

1

20

Small-scale

0.445

High

1199498

KLH22
Kelch-like protein 22

1

4

High-throughput

0.445

High

1212010

BAP1
Ubiquitin carboxyl-terminal hydrolase BAP1

1

13

Small-scale

0.445

High

1081271

LR74A
Leucine-rich repeat-containing protein 74A

1

1

High-throughput

0.437

High

1211991

CFA58
Cilia- and flagella-associated protein 58

1

19

High-throughput

0.437

High

1211997

CE128
Centrosomal protein of 128 kDa

1

20

High-throughput

0.437

High

1212015

EVI5L
EVI5-like protein

1

3

High-throughput

0.437

High

1212022

SNX27
Sorting nexin-27

1

18

High-throughput

0.437

High

1212029

OSBL1
Oxysterol-binding protein-related protein 1

1

1

High-throughput

0.437

High

1212034

PKHA4
Pleckstrin homology domain-containing family A member 4

1

20

High-throughput

0.437

High

1212050

TBA8
Tubulin alpha-8 chain

1

11

High-throughput

0.437

High

1063959

ECHP
Peroxisomal bifunctional enzyme

1

2

High-throughput

0.407

High

488056

IFI6
Interferon alpha-inducible protein 6

1

0

High-throughput

0.279

Low

505167

OST4
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4

1

0

High-throughput

0.279

Low

694349

CO8A1
Collagen alpha-1(VIII) chain

1

0

High-throughput

0.279

Low

813119

OST48
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit

1

0

High-throughput

0.279

Low

1212020

RUSF1
RUS family member 1

1

0

High-throughput

0.279

Low

1212052

PEN2
Gamma-secretase subunit PEN-2

1

0

High-throughput

0.279

Low

516765

SCHI1
Schwannomin-interacting protein 1

1

0

High-throughput

0.249

Low

1212040

MID51
Mitochondrial dynamics protein MIEF1

1

0

High-throughput

0.249

Low

1212045

ABHDA
Palmitoyl-protein thioesterase ABHD10, mitochondrial

1

0

High-throughput

0.249

Low


Service provided by Combinatics, Japan

Last updated: 11Aug2025