Protein: ZC11A
Zinc finger CCCH domain-containing protein 11A

Gene: ZC11A, ZC3H11A
Organism: Homo sapiens
Interactions: 197
UniProt ID: O75152

Gene Ontology (top 5):
GO:0003723 - RNA binding
GO:0005654 - nucleoplasm
GO:0008270 - zinc ion binding
GO:0016607 - nuclear speck
GO:0016973 - poly(A)+ mRNA export from nucleus

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

272857

MYC
Myc proto-oncogene protein

5

1

High-throughput

0.702

High

272895

MLH1
DNA mismatch repair protein Mlh1

5

0

High-throughput

0.693

High

272930

DX39B
Spliceosome RNA helicase DDX39B

3

2

High-throughput

0.667

High

272966

ZCH18
Zinc finger CCCH domain-containing protein 18

3

1

High-throughput

0.667

High

272946

NCBP3
Nuclear cap-binding protein subunit 3

4

0

High-throughput

0.661

High

250954

PRP17
Pre-mRNA-processing factor 17

1

0

High-throughput

0.656

High

272921

ELAV2
ELAV-like protein 2

2

3

High-throughput

0.628

High

272933

RBM39
RNA-binding protein 39

2

3

High-throughput

0.611

High

272909

SARNP
SAP domain-containing ribonucleoprotein

2

0

High-throughput

0.602

High

272941

SF3A1
Splicing factor 3A subunit 1

2

0

High-throughput

0.602

High

272969

ERF3B
Eukaryotic peptide chain release factor GTP-binding subunit ERF3B

2

0

High-throughput

0.602

High

272986

THOC1
THO complex subunit 1

2

0

High-throughput

0.585

High

272996

IER2
Immediate early response gene 2 protein

2

0

High-throughput

0.585

High

272999

MKRN2
E3 ubiquitin-protein ligase makorin-2

2

0

High-throughput

0.585

High

272954

Q6ICH2
single-stranded DNA cytosine deaminase

2

2

High-throughput

0.584

High

272975

KBTB7
Kelch repeat and BTB domain-containing protein 7

2

1

High-throughput

0.574

High

272858

ESR1
Estrogen receptor

2

1

High-throughput

0.571

High

259203

BRD4
Bromodomain-containing protein 4

2

0

High-throughput

0.559

High

272873

XRCC6
X-ray repair cross-complementing protein 6

2

0

High-throughput

0.559

High

272951

A16L1
Autophagy-related protein 16-1

1

1

High-throughput

0.553

High

74411

HNRC2
Heterogeneous nuclear ribonucleoprotein C-like 2

1

3

High-throughput

0.536

High

230488

KIF1C
Kinesin-like protein KIF1C

1

1

High-throughput

0.536

High

256557

HNRC1
Heterogeneous nuclear ribonucleoprotein C-like 1

1

3

High-throughput

0.536

High

272851

SRS10
Serine/arginine-rich splicing factor 10

1

3

High-throughput

0.536

High

272856

PTBP3
Polypyrimidine tract-binding protein 3

1

1

High-throughput

0.536

High

272864

HNRPC
Heterogeneous nuclear ribonucleoproteins C1/C2

1

5

High-throughput

0.536

High

272865

RU2B
U2 small nuclear ribonucleoprotein B''

1

5

High-throughput

0.536

High

272867

SNRPA
U1 small nuclear ribonucleoprotein A

1

5

High-throughput

0.536

High

272872

PABP1
Polyadenylate-binding protein 1

1

1

High-throughput

0.536

High

272886

CTNB1
Catenin beta-1

1

1

High-throughput

0.536

High

272889

FUS
RNA-binding protein FUS

1

2

High-throughput

0.536

High

272902

CLK2
Dual specificity protein kinase CLK2

1

1

High-throughput

0.536

High

272903

CLK3
Dual specificity protein kinase CLK3

1

1

High-throughput

0.536

High

272908

YBOX1
Y-box-binding protein 1

1

2

High-throughput

0.536

High

272910

SRSF3
Serine/arginine-rich splicing factor 3

1

4

High-throughput

0.536

High

272915

DHX9
ATP-dependent RNA helicase A

1

1

High-throughput

0.536

High

272923

SRSF6
Serine/arginine-rich splicing factor 6

1

2

High-throughput

0.536

High

272924

PPIG
Peptidyl-prolyl cis-trans isomerase G

1

1

High-throughput

0.536

High

272926

PRP4K
Serine/threonine-protein kinase PRP4 homolog

1

1

High-throughput

0.536

High

272931

SAFB2
Scaffold attachment factor B2

1

2

High-throughput

0.536

High

272934

DHX8
ATP-dependent RNA helicase DHX8

1

1

High-throughput

0.536

High

272939

RNPS1
RNA-binding protein with serine-rich domain 1

1

3

High-throughput

0.536

High

272940

RBMS2
RNA-binding motif, single-stranded-interacting protein 2

1

4

High-throughput

0.536

High

272944

CPSF6
Cleavage and polyadenylation specificity factor subunit 6

1

1

High-throughput

0.536

High

272959

LN28B
Protein lin-28 homolog B

1

2

High-throughput

0.536

High

272964

PABP2
Polyadenylate-binding protein 2

1

2

High-throughput

0.536

High

272967

RBM45
RNA-binding protein 45

1

5

High-throughput

0.536

High

272971

THOC2
THO complex subunit 2

1

1

High-throughput

0.536

High

272984

RMXL1
RNA binding motif protein, X-linked-like-1

1

2

High-throughput

0.536

High

272994

SRSF8
Serine/arginine-rich splicing factor 8

1

2

High-throughput

0.536

High

272995

RBM42
RNA-binding protein 42

1

1

High-throughput

0.536

High

272998

CRNL1
Crooked neck-like protein 1

1

1

High-throughput

0.536

High

273003

SYF1
Pre-mRNA-splicing factor SYF1

1

1

High-throughput

0.536

High

273006

DDX21
Nucleolar RNA helicase 2

1

2

High-throughput

0.536

High

273011

BCLF1
Bcl-2-associated transcription factor 1

1

1

High-throughput

0.536

High

273016

RALY
RNA-binding protein Raly

1

3

High-throughput

0.536

High

273018

ACINU
Apoptotic chromatin condensation inducer in the nucleus

1

1

High-throughput

0.536

High

272914

FOXM1
Forkhead box protein M1

1

0

High-throughput

0.530

High

272919

SNF5
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

1

0

High-throughput

0.518

High

272869

H14
Histone H1.4

1

1

High-throughput

0.515

High

272876

H12
Histone H1.2

1

1

High-throughput

0.515

High

142462

IMA3
Importin subunit alpha-3

1

0

High-throughput

0.513

High

192529

NUP42
Nucleoporin NUP42

1

0

High-throughput

0.513

High

219892

XRCC3
DNA repair protein XRCC3

1

0

High-throughput

0.513

High

245042

AQR
RNA helicase aquarius

1

0

High-throughput

0.513

High

257026

F262
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2

1

0

High-throughput

0.513

High

272585

BRE1B
E3 ubiquitin-protein ligase BRE1B

1

0

High-throughput

0.513

High

272852

SF3B1
Splicing factor 3B subunit 1

1

0

High-throughput

0.513

High

272855

SLU7
Pre-mRNA-splicing factor SLU7

1

0

High-throughput

0.513

High

272868

RU1C
U1 small nuclear ribonucleoprotein C

1

0

High-throughput

0.513

High

272871

TOP1
DNA topoisomerase 1

1

0

High-throughput

0.513

High

272874

RSMB
Small nuclear ribonucleoprotein-associated proteins B and B'

1

0

High-throughput

0.513

High

272878

RL35A
Large ribosomal subunit protein eL33

1

0

High-throughput

0.513

High

272879

E2AK2
Interferon-induced, double-stranded RNA-activated protein kinase

1

0

High-throughput

0.513

High

272897

KI67
Proliferation marker protein Ki-67

1

0

High-throughput

0.513

High

272906

RUXF
Small nuclear ribonucleoprotein F

1

0

High-throughput

0.513

High

272912

AK17A
A-kinase anchor protein 17A

1

0

High-throughput

0.513

High

272916

SSRP1
FACT complex subunit SSRP1

1

0

High-throughput

0.513

High

272929

THOC5
THO complex subunit 5

1

0

High-throughput

0.513

High

272945

HNRL2
Heterogeneous nuclear ribonucleoprotein U-like protein 2

1

0

High-throughput

0.513

High

272952

VIR
Protein virilizer homolog

1

0

High-throughput

0.513

High

272953

THOC7
THO complex subunit 7

1

0

High-throughput

0.513

High

272956

FIGL1
Fidgetin-like protein 1

1

0

High-throughput

0.513

High

272957

ZC3HE
Zinc finger CCCH domain-containing protein 14

1

0

High-throughput

0.513

High

272973

CCD12
Coiled-coil domain-containing protein 12

1

0

High-throughput

0.513

High

272974

CATIN
Splicing factor Cactin

1

0

High-throughput

0.513

High

272978

LAR4B
La-related protein 4B

1

0

High-throughput

0.513

High

272985

RBM33
RNA-binding protein 33

1

0

High-throughput

0.513

High

272989

YTDC1
YTH domain-containing protein 1

1

0

High-throughput

0.513

High

272990

UIF
UAP56-interacting factor

1

0

High-throughput

0.513

High

273000

PININ
Pinin

1

0

High-throughput

0.513

High

273012

TLS1
Splicing factor C9orf78

1

0

High-throughput

0.513

High

273013

F120A
Constitutive coactivator of PPAR-gamma-like protein 1

1

0

High-throughput

0.513

High

273015

PURG
Purine-rich element-binding protein gamma

1

0

High-throughput

0.513

High

273017

HDAC9
Histone deacetylase 9

1

0

High-throughput

0.513

High

273019

ISY1
Pre-mRNA-splicing factor ISY1 homolog

1

0

High-throughput

0.513

High

273024

RTCB
RNA-splicing ligase RtcB homolog

1

0

High-throughput

0.513

High

273025

CCDC9
Coiled-coil domain-containing protein 9

1

0

High-throughput

0.513

High

273026

CHTOP
Chromatin target of PRMT1 protein

1

0

High-throughput

0.513

High

272976

RPGF4
Rap guanine nucleotide exchange factor 4

1

1

High-throughput

0.494

High

272882

ELAV4
ELAV-like protein 4

1

3

High-throughput

0.489

High

272885

NKTR
NK-tumor recognition protein

1

1

High-throughput

0.489

High

272983

PABP5
Polyadenylate-binding protein 5

1

2

High-throughput

0.489

High

272905

SUMO2
Small ubiquitin-related modifier 2

1

0

High-throughput

0.480

High

272859

MYCN
N-myc proto-oncogene protein

1

1

High-throughput

0.479

High

272866

RU17
U1 small nuclear ribonucleoprotein 70 kDa

1

2

High-throughput

0.479

High

272877

CEBPB
CCAAT/enhancer-binding protein beta

1

1

High-throughput

0.479

High

272893

BRCA1
Breast cancer type 1 susceptibility protein

1

1

High-throughput

0.479

High

272898

RECQ1
ATP-dependent DNA helicase Q1

1

1

High-throughput

0.479

High

272922

TADBP
TAR DNA-binding protein 43

1

1

High-throughput

0.479

High

272927

TRA2A
Transformer-2 protein homolog alpha

1

1

High-throughput

0.479

High

272943

E2F4
Transcription factor E2F4

1

1

High-throughput

0.479

High

272979

ESR2
Estrogen receptor beta

1

1

High-throughput

0.479

High

273002

LN28A
Protein lin-28 homolog A

1

2

High-throughput

0.479

High

273027

RBM8A
RNA-binding protein 8A

1

2

High-throughput

0.479

High

128663

MEN1
Menin

1

0

High-throughput

0.458

High

217605

TGON2
Trans-Golgi network integral membrane protein 2

1

0

High-throughput

0.458

High

240262

PRKN
E3 ubiquitin-protein ligase parkin

1

0

High-throughput

0.458

High

272854

TRI37
E3 ubiquitin-protein ligase TRIM37

1

0

High-throughput

0.458

High

272870

HSP7C
Heat shock cognate 71 kDa protein

1

0

High-throughput

0.458

High

272875

RFA2
Replication protein A 32 kDa subunit

1

0

High-throughput

0.458

High

272883

RFA1
Replication protein A 70 kDa DNA-binding subunit

1

0

High-throughput

0.458

High

272884

PML
Protein PML

1

0

High-throughput

0.458

High

272887

BMI1
Polycomb complex protein BMI-1

1

0

High-throughput

0.458

High

272888

RFA3
Replication protein A 14 kDa subunit

1

0

High-throughput

0.458

High

272892

SYUA
Alpha-synuclein

1

0

High-throughput

0.458

High

272896

CCNF
Cyclin-F

1

0

High-throughput

0.458

High

272899

YAP1
Transcriptional coactivator YAP1

1

0

High-throughput

0.458

High

272907

H4
Histone H4

1

0

High-throughput

0.458

High

272911

HSF1
Heat shock factor protein 1

1

0

High-throughput

0.458

High

272913

TF65
Transcription factor p65

1

0

High-throughput

0.458

High

272920

CHD3
Chromodomain-helicase-DNA-binding protein 3

1

0

High-throughput

0.458

High

272925

BIRC3
Baculoviral IAP repeat-containing protein 3

1

0

High-throughput

0.458

High

272928

CUL3
Cullin-3

1

0

High-throughput

0.458

High

272937

PAF15
PCNA-associated factor

1

0

Small-scale

0.458

High

272942

EZH2
Histone-lysine N-methyltransferase EZH2

1

0

High-throughput

0.458

High

272947

GLE1
mRNA export factor GLE1

1

0

High-throughput

0.458

High

272958

RICTR
Rapamycin-insensitive companion of mTOR

1

0

High-throughput

0.458

High

272963

PARPT
Protein mono-ADP-ribosyltransferase TIPARP

1

0

High-throughput

0.458

High

272965

NAA40
N-alpha-acetyltransferase 40

1

0

High-throughput

0.458

High

272968

SMC5
Structural maintenance of chromosomes protein 5

1

0

High-throughput

0.458

High

272972

DOT1L
Histone-lysine N-methyltransferase, H3 lysine-79 specific

1

0

High-throughput

0.458

High

272977

TOPB1
DNA topoisomerase 2-binding protein 1

1

0

High-throughput

0.458

High

272980

UBP7
Ubiquitin carboxyl-terminal hydrolase 7

1

0

Small-scale

0.458

High

272981

FUBP1
Far upstream element-binding protein 1

1

0

High-throughput

0.458

High

272992

NECD
Necdin

1

0

High-throughput

0.458

High

272993

ANM1
Protein arginine N-methyltransferase 1

1

0

High-throughput

0.458

High

272997

FACD2
Fanconi anemia group D2 protein

1

0

High-throughput

0.458

High

273005

ANLN
Anillin

1

0

High-throughput

0.458

High

273007

SIR7
NAD-dependent protein deacetylase sirtuin-7

1

0

High-throughput

0.458

High

273008

AATF
Protein AATF

1

0

High-throughput

0.458

High

273010

TE2IP
Telomeric repeat-binding factor 2-interacting protein 1

1

0

High-throughput

0.458

High

273014

ZRAN1
Ubiquitin thioesterase ZRANB1

1

0

High-throughput

0.458

High

273022

FZR1
Fizzy-related protein homolog

1

0

High-throughput

0.458

High

73358

B2CML4
single-stranded DNA cytosine deaminase

1

2

High-throughput

0.445

High

143373

E2F3
Transcription factor E2F3

1

1

Small-scale

0.445

High

272862

JUN
Transcription factor Jun

1

1

High-throughput

0.445

High

272894

IF4A3
Eukaryotic initiation factor 4A-III

1

1

High-throughput

0.445

High

272904

NCBP2
Nuclear cap-binding protein subunit 2

1

3

High-throughput

0.445

High

272982

ABC3D
DNA dC->dU-editing enzyme APOBEC-3D

1

2

High-throughput

0.445

High

272938

KIF14
Kinesin-like protein KIF14

1

1

High-throughput

0.437

High

272917

NCBP1
Nuclear cap-binding protein subunit 1

1

0

High-throughput

0.426

High

272935

RRP1B
Ribosomal RNA processing protein 1 homolog B

1

0

High-throughput

0.426

High

272949

LRRK2
Leucine-rich repeat serine/threonine-protein kinase 2

1

0

High-throughput

0.426

High

272970

RN169
E3 ubiquitin-protein ligase RNF169

1

0

Small-scale

0.426

High

272988

CEP63
Centrosomal protein of 63 kDa

1

0

High-throughput

0.426

High

273028

X5D7N4
Rap guanine nucleotide exchange factor 4

1

1

High-throughput

0.417

High

272901

CEBPA
CCAAT/enhancer-binding protein alpha

1

1

High-throughput

0.408

High

272961

NKAP1
Uncharacterized protein NKAPD1

2

0

High-throughput

0.328

High

272891

SPB5
Serpin B5

2

0

High-throughput

0.318

High

273004

XAGE1
X antigen family member 1

2

0

High-throughput

0.313

High

193074

DDX3Y
ATP-dependent RNA helicase DDX3Y

1

0

High-throughput

0.279

Low

272880

TNR1B
Tumor necrosis factor receptor superfamily member 1B

1

0

High-throughput

0.279

Low

272881

TBG1
Tubulin gamma-1 chain

1

0

High-throughput

0.279

Low

272991

TCPQM
T-complex protein 1 subunit theta-like 2

1

0

High-throughput

0.279

Low

273020

PAI2B
Polyadenylate-binding protein-interacting protein 2B

1

0

High-throughput

0.279

Low

273023

KLH20
Kelch-like protein 20

1

0

High-throughput

0.279

Low

272960

DG2L6
Diacylglycerol O-acyltransferase 2-like protein 6

1

0

High-throughput

0.269

Low

272900

MTR1A
Melatonin receptor type 1A

1

0

High-throughput

0.265

Low

271759

OBSL1
Obscurin-like protein 1

1

0

High-throughput

0.249

Low

272853

UFL1
E3 UFM1-protein ligase 1

1

0

High-throughput

0.249

Low

272860

NTRK1
High affinity nerve growth factor receptor

1

0

High-throughput

0.249

Low

272861

A4
Amyloid-beta precursor protein

1

0

High-throughput

0.249

Low

272863

CATL1
Procathepsin L

1

0

High-throughput

0.249

Low

272890

VGFR2
Vascular endothelial growth factor receptor 2

1

0

High-throughput

0.249

Low

272918

ARL16
ADP-ribosylation factor-like protein 16

1

0

High-throughput

0.249

Low

272932

GRM2
Metabotropic glutamate receptor 2

1

0

High-throughput

0.249

Low

272936

CUL7
Cullin-7

1

0

High-throughput

0.249

Low

272962

CYFP1
Cytoplasmic FMR1-interacting protein 1

1

0

High-throughput

0.249

Low

272987

DDRGK
DDRGK domain-containing protein 1

1

0

High-throughput

0.249

Low

273001

TXNIP
Thioredoxin-interacting protein

1

0

Small-scale

0.249

Low

273021

HECD1
E3 ubiquitin-protein ligase HECTD1

1

0

High-throughput

0.249

Low

231540

PRKY
Putative serine/threonine-protein kinase PRKY

1

0

High-throughput

0.232

Low

272948

ODFP2
Outer dense fiber protein 2

1

0

High-throughput

0.232

Low

272950

CP135
Centrosomal protein of 135 kDa

1

0

High-throughput

0.232

Low

272955

REEP3
Receptor expression-enhancing protein 3

1

0

High-throughput

0.232

Low

273009

SPNXC
Sperm protein associated with the nucleus on the X chromosome C

1

0

High-throughput

0.232

Low


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Last updated: 11Aug2025