Protein: ZC3HA
Zinc finger CCCH domain-containing protein 10

Gene: ZC3HA, ZC3H10
Organism: Homo sapiens
Interactions: 199
UniProt ID: Q96K80

Gene Ontology (top 5):
GO:0003723 - RNA binding
GO:0005634 - nucleus
GO:0008270 - zinc ion binding
GO:0010608 - post-transcriptional regulation of gene expression
GO:0035198 - miRNA binding

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

1372032

RBPMS
RNA-binding protein with multiple splicing

2

1

High-throughput

0.834

High

1395795

ZC3HA
Zinc finger CCCH domain-containing protein 10

2

1

High-throughput

0.815

High

1253978

RBPS2
RNA-binding protein with multiple splicing 2

2

1

High-throughput

0.783

High

1395805

RBM4B
RNA-binding protein 4B

2

0

High-throughput

0.748

High

1395816

RBM38
RNA-binding protein 38

2

0

High-throughput

0.742

High

256668

HNRC1
Heterogeneous nuclear ribonucleoprotein C-like 1

1

2

High-throughput

0.691

High

1062082

SRSF4
Serine/arginine-rich splicing factor 4

1

2

High-throughput

0.691

High

1099206

SRSF5
Serine/arginine-rich splicing factor 5

1

1

High-throughput

0.691

High

228741

U3IP2
U3 small nucleolar RNA-interacting protein 2

1

0

High-throughput

0.656

High

841426

RBM34
RNA-binding protein 34

1

0

High-throughput

0.656

High

1121071

BOP1
Ribosome biogenesis protein BOP1

1

0

High-throughput

0.656

High

1134032

ZN638
Zinc finger protein 638

1

0

High-throughput

0.656

High

1247279

WDR74
WD repeat-containing protein 74

1

0

High-throughput

0.656

High

1395811

MK67I
MKI67 FHA domain-interacting nucleolar phosphoprotein

1

0

High-throughput

0.656

High

1395835

RBM28
RNA-binding protein 28

1

0

High-throughput

0.656

High

1395853

UTP18
U3 small nucleolar RNA-associated protein 18 homolog

1

0

High-throughput

0.656

High

1332300

BOLL
Protein boule-like

2

0

High-throughput

0.655

High

927494

ATX1
Ataxin-1

3

0

High-throughput

0.648

High

1139113

DAZP2
DAZ-associated protein 2

3

0

High-throughput

0.643

High

659698

NFYA
Nuclear transcription factor Y subunit alpha

3

0

High-throughput

0.626

High

210088

CRX
Cone-rod homeobox protein

2

1

High-throughput

0.606

High

733266

OTX2
Homeobox protein OTX2

2

1

High-throughput

0.606

High

1381893

TET5B
Terminal nucleotidyltransferase 5B

2

1

High-throughput

0.606

High

936568

AF17
Protein AF-17

2

0

High-throughput

0.602

High

961805

RL37A
Large ribosomal subunit protein eL43

2

0

High-throughput

0.602

High

984497

RL30
Large ribosomal subunit protein eL30

2

0

High-throughput

0.602

High

1057854

RL18
Large ribosomal subunit protein eL18

2

0

High-throughput

0.602

High

211390

RFOX2
RNA binding protein fox-1 homolog 2

1

0

High-throughput

0.589

High

478160

SNRPA
U1 small nuclear ribonucleoprotein A

1

0

High-throughput

0.589

High

288128

FOXH1
Forkhead box protein H1

2

0

High-throughput

0.580

High

297851

PIAS2
E3 SUMO-protein ligase PIAS2

2

0

High-throughput

0.580

High

576254

PO2F1
POU domain, class 2, transcription factor 1

2

0

High-throughput

0.580

High

772189

MSX2
Homeobox protein MSX-2

2

0

High-throughput

0.580

High

921054

FOSB
Protein FosB

2

0

High-throughput

0.580

High

1004980

RNF4
E3 ubiquitin-protein ligase RNF4

2

0

High-throughput

0.580

High

1044696

ARI5A
AT-rich interactive domain-containing protein 5A

2

0

High-throughput

0.580

High

1107596

PICAL
Phosphatidylinositol-binding clathrin assembly protein

2

0

High-throughput

0.580

High

1215004

INT11
Integrator complex subunit 11

2

0

High-throughput

0.580

High

1395796

SMIP9
Protein SPMIP9

2

0

High-throughput

0.580

High

1395836

PK1IP
p21-activated protein kinase-interacting protein 1

1

0

High-throughput

0.578

High

824288

RL13A
Large ribosomal subunit protein uL13

2

0

High-throughput

0.576

High

973268

RS13
Small ribosomal subunit protein uS15

2

0

High-throughput

0.576

High

975867

RL7A
Large ribosomal subunit protein eL8

2

0

High-throughput

0.576

High

1395813

REXO4
RNA exonuclease 4

2

0

High-throughput

0.576

High

1365959

APBP2
Amyloid protein-binding protein 2

1

0

High-throughput

0.549

High

183057

NKRF
NF-kappa-B-repressing factor

1

1

High-throughput

0.536

High

287093

PRKRA
Interferon-inducible double-stranded RNA-dependent protein kinase activator A

1

3

High-throughput

0.536

High

346200

STAU1
Double-stranded RNA-binding protein Staufen homolog 1

1

3

High-throughput

0.536

High

517801

GLI4
Zinc finger protein GLI4

1

1

High-throughput

0.536

High

600194

ZNF22
Zinc finger protein 22

1

1

High-throughput

0.536

High

886561

CTCF
Transcriptional repressor CTCF

1

1

High-throughput

0.536

High

921347

CEBPG
CCAAT/enhancer-binding protein gamma

1

1

High-throughput

0.536

High

1098271

DDX10
Probable ATP-dependent RNA helicase DDX10

1

2

High-throughput

0.536

High

1271504

DHX30
ATP-dependent RNA helicase DHX30

1

1

High-throughput

0.536

High

1310720

PHF6
PHD finger protein 6

1

1

High-throughput

0.536

High

1314205

SPB1
pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3

1

1

High-throughput

0.536

High

1351010

DDX54
ATP-dependent RNA helicase DDX54

1

1

High-throughput

0.536

High

1351442

BRX1
Ribosome biogenesis protein BRX1 homolog

1

3

High-throughput

0.536

High

1356015

NOC3L
Nucleolar complex protein 3 homolog

1

1

High-throughput

0.536

High

1392209

DDX27
Probable ATP-dependent RNA helicase DDX27

1

1

High-throughput

0.536

High

1395798

ZN512
Zinc finger protein 512

1

1

High-throughput

0.536

High

1395806

DDX50
ATP-dependent RNA helicase DDX50

1

1

High-throughput

0.536

High

1395812

GTPB4
GTP-binding protein 4

1

1

High-throughput

0.536

High

1395814

DDX24
ATP-dependent RNA helicase DDX24

1

1

High-throughput

0.536

High

1395819

YTDC2
3'-5' RNA helicase YTHDC2

1

1

High-throughput

0.536

High

1395821

DDX31
ATP-dependent DNA helicase DDX31

1

2

High-throughput

0.536

High

1395822

RPF1
Ribosome production factor 1

1

1

High-throughput

0.536

High

1395824

E41L5
Band 4.1-like protein 5

1

1

High-throughput

0.536

High

1395829

DDX21
Nucleolar RNA helicase 2

1

1

High-throughput

0.536

High

1395831

STAU2
Double-stranded RNA-binding protein Staufen homolog 2

1

3

High-throughput

0.536

High

1395833

DDX18
ATP-dependent RNA helicase DDX18

1

3

High-throughput

0.536

High

1395837

CARF
CDKN2A-interacting protein

1

1

High-throughput

0.536

High

1395840

DDX56
Probable ATP-dependent RNA helicase DDX56

1

1

High-throughput

0.536

High

1017735

PR20A
Proline-rich protein 20A

2

2

High-throughput

0.533

High

61980

GTPBA
GTP-binding protein 10

1

0

High-throughput

0.513

High

140622

MPP10
U3 small nucleolar ribonucleoprotein protein MPP10

1

0

High-throughput

0.513

High

141054

NOP56
Nucleolar protein 56

1

0

High-throughput

0.513

High

208342

RRP8
Ribosomal RNA-processing protein 8

1

0

High-throughput

0.513

High

257937

DKC1
H/ACA ribonucleoprotein complex subunit DKC1

1

0

High-throughput

0.513

High

280778

PR40A
Pre-mRNA-processing factor 40 homolog A

1

0

High-throughput

0.513

High

288735

NPM3
Nucleoplasmin-3

1

0

High-throughput

0.513

High

290680

SURF6
Surfeit locus protein 6

1

0

High-throughput

0.513

High

301170

RL1D1
Ribosomal L1 domain-containing protein 1

1

0

High-throughput

0.513

High

338170

NSA2
Ribosome biogenesis protein NSA2 homolog

1

0

High-throughput

0.513

High

428913

RLA0
Large ribosomal subunit protein uL10

1

0

High-throughput

0.513

High

644210

RS4Y1
Small ribosomal subunit protein eS4, Y isoform 1

1

0

High-throughput

0.513

High

686345

RL13
Large ribosomal subunit protein eL13

1

0

High-throughput

0.513

High

770043

RFC1
Replication factor C subunit 1

1

0

High-throughput

0.513

High

859947

RL28
Large ribosomal subunit protein eL28

1

0

High-throughput

0.513

High

898766

RL14
Large ribosomal subunit protein eL14

1

0

High-throughput

0.513

High

943727

PRD15
PR domain zinc finger protein 15

1

0

High-throughput

0.513

High

960838

RL15
Large ribosomal subunit protein eL15

1

0

High-throughput

0.513

High

985523

RL32
Large ribosomal subunit protein eL32

1

0

High-throughput

0.513

High

986149

RL8
Large ribosomal subunit protein uL2

1

0

High-throughput

0.513

High

1037316

H11
Histone H1.1

1

0

High-throughput

0.513

High

1043728

CEBPZ
CCAAT/enhancer-binding protein zeta

1

0

High-throughput

0.513

High

1109196

PRP4K
Serine/threonine-protein kinase PRP4 homolog

1

0

High-throughput

0.513

High

1117637

NOG2
Nucleolar GTP-binding protein 2

1

0

High-throughput

0.513

High

1130387

RRP1B
Ribosomal RNA processing protein 1 homolog B

1

0

High-throughput

0.513

High

1130815

RRP5
Protein RRP5 homolog

1

0

High-throughput

0.513

High

1130957

BMS1
Ribosome biogenesis protein BMS1 homolog

1

0

High-throughput

0.513

High

1139994

RRS1
Ribosome biogenesis regulatory protein homolog

1

0

High-throughput

0.513

High

1146521

TTF1
Transcription termination factor 1

1

0

High-throughput

0.513

High

1148142

PUM3
Pumilio homolog 3

1

0

High-throughput

0.513

High

1149963

TERF2
Telomeric repeat-binding factor 2

1

0

High-throughput

0.513

High

1200515

TAF1B
TATA box-binding protein-associated factor RNA polymerase I subunit B

1

0

High-throughput

0.513

High

1203891

NOM1
Nucleolar MIF4G domain-containing protein 1

1

0

High-throughput

0.513

High

1208873

H2B2F
Histone H2B type 2-F

1

0

High-throughput

0.513

High

1231646

RL7L
Ribosomal protein uL30-like

1

0

High-throughput

0.513

High

1234778

ZN770
Zinc finger protein 770

1

0

High-throughput

0.513

High

1245481

CC137
Coiled-coil domain-containing protein 137

1

0

High-throughput

0.513

High

1275614

ZCCHV
Zinc finger CCCH-type antiviral protein 1

1

0

High-throughput

0.513

High

1281442

ZN467
Zinc finger protein 467

1

0

High-throughput

0.513

High

1281519

CENPV
Centromere protein V

1

0

High-throughput

0.513

High

1291137

CAND1
Cullin-associated NEDD8-dissociated protein 1

1

0

High-throughput

0.513

High

1314679

SRRM1
Serine/arginine repetitive matrix protein 1

1

0

High-throughput

0.513

High

1316435

XRN1
5'-3' exoribonuclease 1

1

0

High-throughput

0.513

High

1316572

PELP1
Proline-, glutamic acid- and leucine-rich protein 1

1

0

High-throughput

0.513

High

1325594

ZCHC7
Zinc finger CCHC domain-containing protein 7

1

0

High-throughput

0.513

High

1332213

KRI1
Protein KRI1 homolog

1

0

High-throughput

0.513

High

1336618

PAPD5
Terminal nucleotidyltransferase 4B

1

0

High-throughput

0.513

High

1361736

DGCR8
Microprocessor complex subunit DGCR8

1

0

High-throughput

0.513

High

1365573

MY18A
Unconventional myosin-XVIIIa

1

0

High-throughput

0.513

High

1390578

NEIL1
Endonuclease 8-like 1

1

0

High-throughput

0.513

High

1395685

ZN668
Zinc finger protein 668

1

0

High-throughput

0.513

High

1395802

F111A
Serine protease FAM111A

1

0

High-throughput

0.513

High

1395804

POP1
Ribonucleases P/MRP protein subunit POP1

1

0

High-throughput

0.513

High

1395807

MBB1A
Myb-binding protein 1A

1

0

High-throughput

0.513

High

1395808

CHOLN
Protein cholesin

1

0

High-throughput

0.513

High

1395809

MMTA2
Multiple myeloma tumor-associated protein 2

1

0

High-throughput

0.513

High

1395810

MAK16
Protein MAK16 homolog

1

0

High-throughput

0.513

High

1395815

ADT4
ADP/ATP translocase 4

1

0

High-throughput

0.513

High

1395817

EPN3
Epsin-3

1

0

High-throughput

0.513

High

1395820

RPF2
Ribosome production factor 2 homolog

1

0

High-throughput

0.513

High

1395823

NMNA1
Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1

1

0

High-throughput

0.513

High

1395827

SSF1
Suppressor of SWI4 1 homolog

1

0

High-throughput

0.513

High

1395828

SAS10
Something about silencing protein 10

1

0

High-throughput

0.513

High

1395830

ABC3C
DNA dC->dU-editing enzyme APOBEC-3C

1

0

High-throughput

0.513

High

1395832

SPS2L
SPATS2-like protein

1

0

High-throughput

0.513

High

1395838

GAR1
H/ACA ribonucleoprotein complex subunit 1

1

0

High-throughput

0.513

High

1395839

AATF
Protein AATF

1

0

High-throughput

0.513

High

1395841

TE2IP
Telomeric repeat-binding factor 2-interacting protein 1

1

0

High-throughput

0.513

High

1395842

NOP53
Ribosome biogenesis protein NOP53

1

0

High-throughput

0.513

High

1395844

HERC5
E3 ISG15--protein ligase HERC5

1

0

High-throughput

0.513

High

1395845

TRM6
tRNA

1

0

High-throughput

0.513

High

1395846

ZN346
Zinc finger protein 346

1

0

High-throughput

0.513

High

1395847

ABT1
Activator of basal transcription 1

1

0

High-throughput

0.513

High

1395849

NIP7
60S ribosome subunit biogenesis protein NIP7 homolog

1

0

High-throughput

0.513

High

1395851

NOC2L
Nucleolar complex protein 2 homolog

1

0

High-throughput

0.513

High

1395852

RL36
Large ribosomal subunit protein eL36

1

0

High-throughput

0.513

High

1395818

E41LB
Band 4.1-like protein 4B

1

1

High-throughput

0.489

High

993713

UBC9
SUMO-conjugating enzyme UBC9

1

1

High-throughput

0.481

High

1394295

TET5A
Terminal nucleotidyltransferase 5A

1

1

High-throughput

0.481

High

887129

CEBPA
CCAAT/enhancer-binding protein alpha

1

1

High-throughput

0.479

High

1017618

PR20C
Proline-rich protein 20C

1

2

High-throughput

0.470

High

1017665

PR20D
Proline-rich protein 20D

1

2

High-throughput

0.470

High

1270723

Q7KZS0
SUMO-conjugating enzyme UBC9

1

1

High-throughput

0.470

High

586341

ZEP1
Zinc finger protein 40

1

0

High-throughput

0.460

High

1239374

ESRP1
Epithelial splicing regulatory protein 1

1

0

High-throughput

0.460

High

1315909

ZNF34
Zinc finger protein 34

1

0

High-throughput

0.460

High

1395797

DMRTB
Doublesex- and mab-3-related transcription factor B1

1

0

High-throughput

0.460

High

1395801

QKI
KH domain-containing RNA-binding protein QKI

1

0

High-throughput

0.460

High

406513

MYCN
N-myc proto-oncogene protein

1

0

High-throughput

0.458

High

770260

RL22
Large ribosomal subunit protein eL22

1

0

High-throughput

0.458

High

810292

RL3
Large ribosomal subunit protein uL3

1

0

High-throughput

0.458

High

1114013

CUL3
Cullin-3

1

0

High-throughput

0.458

High

1380718

RL36L
Ribosomal protein eL42-like

1

0

High-throughput

0.458

High

1395848

RL26L
Ribosomal protein uL24-like

1

0

High-throughput

0.458

High

96744

E9PAV9
G patch domain-containing protein 4

1

1

High-throughput

0.437

High

69967

A8KAG1
G patch domain-containing protein 4

1

1

High-throughput

0.407

High

1395800

CEP63
Centrosomal protein of 63 kDa

1

1

High-throughput

0.407

High

50348

F168B
Myelin-associated neurite-outgrowth inhibitor

2

0

High-throughput

0.316

High

192125

PA2GX
Group 10 secretory phospholipase A2

2

0

High-throughput

0.316

High

296551

STAM2
Signal transducing adapter molecule 2

2

0

High-throughput

0.316

High

625869

AOC1
Diamine oxidase [copper-containing]

2

0

High-throughput

0.316

High

968651

NCS1
Neuronal calcium sensor 1

2

0

High-throughput

0.316

High

1133148

LASP1
LIM and SH3 domain protein 1

2

0

High-throughput

0.316

High

1186593

KRA61
Keratin-associated protein 6-1

2

0

High-throughput

0.316

High

1186685

KRA62
Keratin-associated protein 6-2

2

0

High-throughput

0.316

High

1203491

ACTMP
Actin maturation protease

2

0

High-throughput

0.316

High

1211142

CJ055
Uncharacterized protein C10orf55

2

0

High-throughput

0.316

High

1307012

KR191
Keratin-associated protein 19-1

2

0

High-throughput

0.316

High

1307085

KRA81
Keratin-associated protein 8-1

2

0

High-throughput

0.316

High

1351660

OXER1
Oxoeicosanoid receptor 1

2

0

High-throughput

0.316

High

1391399

KLD7B
Kelch domain-containing protein 7B

2

0

High-throughput

0.316

High

286403

DAB1
Disabled homolog 1

1

0

High-throughput

0.299

High

1085808

TF3C1
General transcription factor 3C polypeptide 1

1

0

High-throughput

0.279

Low

1150310

TAF1C
TATA box-binding protein-associated factor RNA polymerase I subunit C

1

0

High-throughput

0.279

Low

1193364

GLYR1
Cytokine-like nuclear factor N-PAC

1

0

High-throughput

0.279

Low

1228598

SPT2
Protein SPT2 homolog

1

0

High-throughput

0.279

Low

1229848

CYTSA
Cytospin-A

1

0

High-throughput

0.279

Low

1395799

CC140
Coiled-coil domain-containing protein 140

1

0

High-throughput

0.279

Low

1395803

NEB2
Neurabin-2

1

0

High-throughput

0.279

Low

1395826

LUC7L
Putative RNA-binding protein Luc7-like 1

1

0

High-throughput

0.279

Low

1395834

SDA1
Protein SDA1 homolog

1

0

High-throughput

0.279

Low

1395843

RLP24
Probable ribosome biogenesis protein RLP24

1

0

High-throughput

0.279

Low

1395850

RRP15
RRP15-like protein

1

0

High-throughput

0.279

Low

1395825

ALG13
UDP-N-acetylglucosamine transferase subunit ALG13

1

0

High-throughput

0.251

Low


Service provided by Combinatics, Japan

Last updated: 11Aug2025