Protein: PAX9
Paired box protein Pax-9

Gene: PAX9
Organism: Homo sapiens
Interactions: 127
UniProt ID: P55771

Gene Ontology (top 5):
GO:0000785 - chromatin
GO:0000978 - RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0005654 - nucleoplasm

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

938514

KDM5B
Lysine-specific demethylase 5B

3

5

Small-scale

0.661

High

938440

TLE5
TLE family member 5

3

20

High-throughput

0.653

High

938432

FLI1
Friend leukemia integration 1 transcription factor

1

2

High-throughput

0.618

High

938435

TLE1
Transducin-like enhancer protein 1

2

20

High-throughput

0.614

High

63180

VP37C
Vacuolar protein sorting-associated protein 37C

2

16

High-throughput

0.606

High

124586

EYA2
Protein phosphatase EYA2

2

9

High-throughput

0.606

High

216902

KLF4
Krueppel-like factor 4

2

3

High-throughput

0.606

High

681773

RBTN2
Rhombotin-2

2

6

High-throughput

0.606

High

938521

PLAL2
Zinc finger protein PLAGL2

2

1

High-throughput

0.606

High

938491

FUBP3
Far upstream element-binding protein 3

2

0

High-throughput

0.588

High

142916

NFIB
Nuclear factor 1 B-type

2

19

High-throughput

0.584

High

938442

NFIA
Nuclear factor 1 A-type

2

20

High-throughput

0.584

High

938460

ZN343
Zinc finger protein 343

2

0

High-throughput

0.580

High

938496

PFD5
Prefoldin subunit 5

2

0

High-throughput

0.580

High

938485

MYLIP
E3 ubiquitin-protein ligase MYLIP

2

1

High-throughput

0.553

High

938436

TLE2
Transducin-like enhancer protein 2

1

20

High-throughput

0.541

High

938449

NR0B2
Nuclear receptor subfamily 0 group B member 2

1

14

High-throughput

0.541

High

938517

ZN580
Zinc finger protein 580

1

3

High-throughput

0.541

High

938452

TRIP4
Activating signal cointegrator 1

1

0

High-throughput

0.518

High

938477

ZN440
Zinc finger protein 440

1

0

High-throughput

0.518

High

138984

BCL9
B-cell CLL/lymphoma 9 protein

1

20

High-throughput

0.479

High

154658

ARI1A
AT-rich interactive domain-containing protein 1A

1

20

High-throughput

0.479

High

161439

KMT2D
Histone-lysine N-methyltransferase 2D

1

20

High-throughput

0.479

High

174331

ZN609
Zinc finger protein 609

1

19

High-throughput

0.479

High

177448

ZN536
Zinc finger protein 536

1

4

High-throughput

0.479

High

194535

KDM6A
Lysine-specific demethylase 6A

1

8

High-throughput

0.479

High

261389

TBL1X
F-box-like/WD repeat-containing protein TBL1X

1

4

High-throughput

0.479

High

277160

ZN217
Zinc finger protein 217

1

4

High-throughput

0.479

High

278286

NCOR1
Nuclear receptor corepressor 1

1

20

High-throughput

0.479

High

297529

PIAS1
E3 SUMO-protein ligase PIAS1

1

2

High-throughput

0.479

High

297777

PIAS2
E3 SUMO-protein ligase PIAS2

1

2

High-throughput

0.479

High

473886

NFIC
Nuclear factor 1 C-type

1

20

High-throughput

0.479

High

505537

ATX1L
Ataxin-1-like

1

9

High-throughput

0.479

High

559744

NR2C1
Nuclear receptor subfamily 2 group C member 1

1

20

High-throughput

0.479

High

625271

CSK22
Casein kinase II subunit alpha'

1

6

High-throughput

0.479

High

725194

HXD11
Homeobox protein Hox-D11

1

20

High-throughput

0.479

High

851480

GATA4
Transcription factor GATA-4

1

6

High-throughput

0.479

High

878842

NR2C2
Nuclear receptor subfamily 2 group C member 2

1

20

High-throughput

0.479

High

893652

MNX1
Motor neuron and pancreas homeobox protein 1

1

20

High-throughput

0.479

High

903111

SMCA2
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2

1

13

High-throughput

0.479

High

916074

NKX25
Homeobox protein Nkx-2.5

1

10

High-throughput

0.479

High

927198

ATX1
Ataxin-1

1

9

High-throughput

0.479

High

928249

ATN1
Atrophin-1

1

20

High-throughput

0.479

High

938430

DCAF7
DDB1- and CUL4-associated factor 7

1

5

High-throughput

0.479

High

938431

FOXK1
Forkhead box protein K1

1

12

High-throughput

0.479

High

938433

SATB1
DNA-binding protein SATB1

1

7

High-throughput

0.479

High

938434

EWS
RNA-binding protein EWS

1

5

High-throughput

0.479

High

938437

TLE3
Transducin-like enhancer protein 3

1

20

High-throughput

0.479

High

938438

TLE4
Transducin-like enhancer protein 4

1

20

High-throughput

0.479

High

938441

EP300
Histone acetyltransferase p300

1

20

High-throughput

0.479

High

938443

FOXC1
Forkhead box protein C1

1

9

High-throughput

0.479

High

938444

GPS2
G protein pathway suppressor 2

1

4

High-throughput

0.479

High

938445

NCOA6
Nuclear receptor coactivator 6

1

20

High-throughput

0.479

High

938447

MEF2D
Myocyte-specific enhancer factor 2D

1

2

High-throughput

0.479

High

938448

NFIX
Nuclear factor 1 X-type

1

20

High-throughput

0.479

High

938450

NCOA2
Nuclear receptor coactivator 2

1

15

High-throughput

0.479

High

938453

ZFHX3
Zinc finger homeobox protein 3

1

10

High-throughput

0.479

High

938456

ARI4B
AT-rich interactive domain-containing protein 4B

1

17

High-throughput

0.479

High

938457

BCL7A
B-cell CLL/lymphoma 7 protein family member A

1

6

High-throughput

0.479

High

938459

NIPBL
Nipped-B-like protein

1

7

High-throughput

0.479

High

938461

MDEAS
Mitotic deacetylase-associated SANT domain protein

1

7

High-throughput

0.479

High

938462

BCOR
BCL-6 corepressor

1

7

High-throughput

0.479

High

938464

PAXI1
PAX-interacting protein 1

1

18

High-throughput

0.479

High

938467

PCGF5
Polycomb group RING finger protein 5

1

18

High-throughput

0.479

High

938468

LDB1
LIM domain-binding protein 1

1

3

High-throughput

0.479

High

938469

PB1
Protein polybromo-1

1

11

High-throughput

0.479

High

938470

ZFHX4
Zinc finger homeobox protein 4

1

11

High-throughput

0.479

High

938471

BCL9L
B-cell CLL/lymphoma 9-like protein

1

20

High-throughput

0.479

High

938473

I2BP1
Interferon regulatory factor 2-binding protein 1

1

2

High-throughput

0.479

High

938474

FOXP4
Forkhead box protein P4

1

16

High-throughput

0.479

High

938475

HOMEZ
Homeobox and leucine zipper protein Homez

1

19

High-throughput

0.479

High

938480

KMT2C
Histone-lysine N-methyltransferase 2C

1

20

High-throughput

0.479

High

938481

ZMIZ2
Zinc finger MIZ domain-containing protein 2

1

7

High-throughput

0.479

High

938482

ARI1B
AT-rich interactive domain-containing protein 1B

1

20

High-throughput

0.479

High

938483

KDM2B
Lysine-specific demethylase 2B

1

6

High-throughput

0.479

High

938484

MORC4
MORC family CW-type zinc finger protein 4

1

5

High-throughput

0.479

High

938486

MAML1
Mastermind-like protein 1

1

20

High-throughput

0.479

High

938487

REQU
Zinc finger protein ubi-d4

1

20

High-throughput

0.479

High

938488

SMRD2
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2

1

14

High-throughput

0.479

High

938489

ZN503
Zinc finger protein 503

1

6

High-throughput

0.479

High

938490

SMRD1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1

1

9

High-throughput

0.479

High

938492

EHMT2
Histone-lysine N-methyltransferase EHMT2

1

2

High-throughput

0.479

High

938495

CIC
Protein capicua homolog

1

20

High-throughput

0.479

High

938498

PYGO2
Pygopus homolog 2

1

2

High-throughput

0.479

High

938499

PCGF1
Polycomb group RING finger protein 1

1

14

High-throughput

0.479

High

938501

TDIF1
Deoxynucleotidyltransferase terminal-interacting protein 1

1

4

High-throughput

0.479

High

938502

BC11A
BCL11 transcription factor A

1

1

High-throughput

0.479

High

938503

FOXP1
Forkhead box protein P1

1

13

High-throughput

0.479

High

938505

ZN644
Zinc finger protein 644

1

5

High-throughput

0.479

High

938506

ZN703
Zinc finger protein 703

1

12

High-throughput

0.479

High

938512

HM20B
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

1

17

High-throughput

0.479

High

938513

CHD7
Chromodomain-helicase-DNA-binding protein 7

1

9

High-throughput

0.479

High

938515

TCF20
Transcription factor 20

1

12

High-throughput

0.479

High

938516

TRPS1
Zinc finger transcription factor Trps1

1

10

High-throughput

0.479

High

938518

ZN608
Zinc finger protein 608

1

10

High-throughput

0.479

High

938522

SATB2
DNA-binding protein SATB2

1

7

High-throughput

0.479

High

938523

NCOR2
Nuclear receptor corepressor 2

1

19

High-throughput

0.479

High

938524

NCOA3
Nuclear receptor coactivator 3

1

15

High-throughput

0.479

High

938525

ZHX2
Zinc fingers and homeoboxes protein 2

1

16

High-throughput

0.479

High

938465

UBP49
Ubiquitin carboxyl-terminal hydrolase 49

1

0

Small-scale

0.458

High

938510

MBNL1
Muscleblind-like protein 1

1

0

High-throughput

0.458

High

728134

AKT1
RAC-alpha serine/threonine-protein kinase

1

3

High-throughput

0.457

High

938439

SSBP
Single-stranded DNA-binding protein, mitochondrial

1

3

High-throughput

0.437

High

938446

GSE1
Genetic suppressor element 1

1

4

High-throughput

0.437

High

938454

QSER1
Glutamine and serine-rich protein 1

1

20

High-throughput

0.437

High

938463

CO039
Uncharacterized protein C15orf39

1

7

High-throughput

0.437

High

938472

PRSR1
Proline and serine-rich protein 1

1

13

High-throughput

0.437

High

938478

RHG24
Rho GTPase-activating protein 24

1

1

High-throughput

0.437

High

938494

QKI
KH domain-containing RNA-binding protein QKI

1

1

High-throughput

0.437

High

938500

SP130
Histone deacetylase complex subunit SAP130

1

14

High-throughput

0.437

High

938504

CPVL
Probable serine carboxypeptidase CPVL

1

1

High-throughput

0.437

High

938507

FBRS
Probable fibrosin-1

1

7

High-throughput

0.437

High

938508

FBSL
Fibrosin-1-like protein

1

7

High-throughput

0.437

High

938509

HM20A
High mobility group protein 20A

1

20

High-throughput

0.437

High

938519

PRR12
Proline-rich protein 12

1

20

High-throughput

0.437

High

730469

1433S
14-3-3 protein sigma

2

0

High-throughput

0.316

High

938451

PCH2
Pachytene checkpoint protein 2 homolog

2

0

High-throughput

0.316

High

938455

KR133
Keratin-associated protein 13-3

2

0

High-throughput

0.316

High

938479

SLAI1
SLAIN motif-containing protein 1

2

0

High-throughput

0.316

High

938493

AP4AT
AP-4 complex accessory subunit Tepsin

2

0

High-throughput

0.316

High

938511

WWOX
WW domain-containing oxidoreductase

2

0

High-throughput

0.316

High

238771

SSX4
Protein SSX4

1

0

High-throughput

0.282

High

938520

TF2AY
TFIIA-alpha and beta-like factor

1

0

High-throughput

0.282

High

938466

ZER1
Protein zer-1 homolog

1

0

High-throughput

0.269

Low

938458

FIGN
Fidgetin

1

0

High-throughput

0.249

Low

938476

RAVR1
Ribonucleoprotein PTB-binding 1

1

0

High-throughput

0.249

Low

938497

CHOLN
Protein cholesin

1

0

High-throughput

0.249

Low


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Last updated: 11Aug2025