Protein: ATG13
Autophagy-related protein 13

Gene: ATG13
Organism: Homo sapiens
Interactions: 227
UniProt ID: O75143

Gene Ontology (top 5):
GO:0000045 - autophagosome assembly
GO:0000407 - phagophore assembly site
GO:0000423 - mitophagy
GO:0005737 - cytoplasm
GO:0005739 - mitochondrion

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

271382

ULK1
Serine/threonine-protein kinase ULK1

28

5

Small-scale

0.769

High

271569

ATGA1
Autophagy-related protein 101

14

2

Small-scale

0.765

High

271551

RBCC1
RB1-inducible coiled-coil protein 1

12

3

Small-scale

0.758

High

271461

GBRL2
Gamma-aminobutyric acid receptor-associated protein-like 2

5

7

Small-scale

0.714

High

271389

GBRAP
Gamma-aminobutyric acid receptor-associated protein

5

7

Small-scale

0.712

High

271576

MLP3B
Microtubule-associated protein 1 light chain 3 beta

4

7

Small-scale

0.708

High

271572

MLP3C
Microtubule-associated protein 1 light chain 3 gamma

4

7

Small-scale

0.707

High

271535

A16L1
Autophagy-related protein 16-1

5

2

Small-scale

0.706

High

271579

MLP3A
Microtubule-associated protein 1 light chain 3 alpha

4

7

Small-scale

0.706

High

271563

CI072
Guanine nucleotide exchange factor C9orf72

4

0

Small-scale

0.665

High

271577

GBRL1
Gamma-aminobutyric acid receptor-associated protein-like 1

3

7

Small-scale

0.658

High

271543

ULK2
Serine/threonine-protein kinase ULK2

3

5

Small-scale

0.657

High

271523

BECN1
Beclin-1

3

0

Small-scale

0.606

High

220665

DENR
Density-regulated protein

2

0

High-throughput

0.602

High

271383

OFD1
Centriole and centriolar satellite protein OFD1

2

0

Small-scale

0.602

High

271544

RPTOR
Regulatory-associated protein of mTOR

2

2

Small-scale

0.595

High

271578

ATG5
Autophagy protein 5

2

0

Small-scale

0.576

High

271561

RNF31
E3 ubiquitin-protein ligase RNF31

1

0

Small-scale

0.554

High

271380

ATG13
Autophagy-related protein 13

2

0

Small-scale

0.552

High

271548

PK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3

2

0

Small-scale

0.547

High

271537

BAKOR
Beclin 1-associated autophagy-related key regulator

1

0

Small-scale

0.537

High

271384

EIF3G
Eukaryotic translation initiation factor 3 subunit G

1

2

High-throughput

0.536

High

271391

STAU1
Double-stranded RNA-binding protein Staufen homolog 1

1

1

High-throughput

0.536

High

271404

PABP1
Polyadenylate-binding protein 1

1

1

High-throughput

0.536

High

271405

XRCC6
X-ray repair cross-complementing protein 6

1

1

High-throughput

0.536

High

271406

XRCC5
X-ray repair cross-complementing protein 5

1

1

High-throughput

0.536

High

271408

HNRPL
Heterogeneous nuclear ribonucleoprotein L

1

3

High-throughput

0.536

High

271411

DDX5
Probable ATP-dependent RNA helicase DDX5

1

1

High-throughput

0.536

High

271417

ROA2
Heterogeneous nuclear ribonucleoproteins A2/B1

1

3

High-throughput

0.536

High

271421

DDX6
Probable ATP-dependent RNA helicase DDX6

1

2

High-throughput

0.536

High

271425

1433B
14-3-3 protein beta/alpha

1

4

High-throughput

0.536

High

271469

1433G
14-3-3 protein gamma

1

4

High-throughput

0.536

High

271499

RACK1
Small ribosomal subunit protein RACK1

1

1

High-throughput

0.536

High

271507

1433F
14-3-3 protein eta

1

4

High-throughput

0.536

High

271512

ILF2
Interleukin enhancer-binding factor 2

1

1

High-throughput

0.536

High

271513

ILF3
Interleukin enhancer-binding factor 3

1

2

High-throughput

0.536

High

271514

ROA0
Heterogeneous nuclear ribonucleoprotein A0

1

4

High-throughput

0.536

High

271515

PABP4
Polyadenylate-binding protein 4

1

1

High-throughput

0.536

High

271516

EIF3I
Eukaryotic translation initiation factor 3 subunit I

1

1

High-throughput

0.536

High

271519

DX39B
Spliceosome RNA helicase DDX39B

1

3

High-throughput

0.536

High

271520

SAFB2
Scaffold attachment factor B2

1

3

High-throughput

0.536

High

271524

ZN638
Zinc finger protein 638

1

1

High-throughput

0.536

High

271540

PABP2
Polyadenylate-binding protein 2

1

2

High-throughput

0.536

High

271542

THOC4
THO complex subunit 4

1

2

High-throughput

0.536

High

271556

DDX17
Probable ATP-dependent RNA helicase DDX17

1

1

High-throughput

0.536

High

271560

SNR40
U5 small nuclear ribonucleoprotein 40 kDa protein

1

2

High-throughput

0.536

High

271566

EIF3C
Eukaryotic translation initiation factor 3 subunit C

1

1

High-throughput

0.536

High

271574

AMRA1
Activating molecule in BECN1-regulated autophagy protein 1

1

1

Small-scale

0.536

High

271589

PRC2C
Protein PRRC2C

1

1

High-throughput

0.536

High

271591

RBM8A
RNA-binding protein 8A

1

2

High-throughput

0.536

High

271437

MTOR
Serine/threonine-protein kinase mTOR

2

0

Small-scale

0.528

High

187602

EIF3D
Eukaryotic translation initiation factor 3 subunit D

1

0

High-throughput

0.513

High

187834

EIF3H
Eukaryotic translation initiation factor 3 subunit H

1

0

High-throughput

0.513

High

210814

PSMD3
26S proteasome non-ATPase regulatory subunit 3

1

0

High-throughput

0.513

High

261681

HUS1
Checkpoint protein HUS1

1

0

High-throughput

0.513

High

271385

SPF30
Survival of motor neuron-related-splicing factor 30

1

0

High-throughput

0.513

High

271386

GLRX3
Glutaredoxin-3

1

0

High-throughput

0.513

High

271392

DHE3
Glutamate dehydrogenase 1, mitochondrial

1

0

High-throughput

0.513

High

271394

RLA1
Large ribosomal subunit protein P1

1

0

High-throughput

0.513

High

271395

RLA2
Large ribosomal subunit protein P2

1

0

High-throughput

0.513

High

271396

RLA0
Large ribosomal subunit protein uL10

1

0

High-throughput

0.513

High

271397

IF4E
Eukaryotic translation initiation factor 4E

1

0

High-throughput

0.513

High

271398

NPM
Nucleophosmin

1

0

High-throughput

0.513

High

271399

SYEP
Bifunctional glutamate/proline--tRNA ligase

1

0

High-throughput

0.513

High

271400

HNRPC
Heterogeneous nuclear ribonucleoproteins C1/C2

1

0

High-throughput

0.513

High

271401

RSSA
Small ribosomal subunit protein uS2

1

0

High-throughput

0.513

High

271403

TOP2A
DNA topoisomerase 2-alpha

1

0

High-throughput

0.513

High

271409

RS2
Small ribosomal subunit protein uS5

1

0

High-throughput

0.513

High

271410

STMN1
Stathmin

1

0

High-throughput

0.513

High

271412

RL35A
Large ribosomal subunit protein eL33

1

0

High-throughput

0.513

High

271413

RL7
Large ribosomal subunit protein uL30

1

0

High-throughput

0.513

High

271414

RL17
Large ribosomal subunit protein uL22

1

0

High-throughput

0.513

High

271418

RS3
Small ribosomal subunit protein uS3

1

0

High-throughput

0.513

High

271419

RS12
Small ribosomal subunit protein eS12

1

0

High-throughput

0.513

High

271423

RL10
Large ribosomal subunit protein uL16

1

0

High-throughput

0.513

High

271424

RL12
Large ribosomal subunit protein uL11

1

0

High-throughput

0.513

High

271427

RL9
Large ribosomal subunit protein uL6

1

0

High-throughput

0.513

High

271428

RL22
Large ribosomal subunit protein eL22

1

0

High-throughput

0.513

High

271429

RL4
Large ribosomal subunit protein uL4

1

0

High-throughput

0.513

High

271432

RS19
Small ribosomal subunit protein eS19

1

0

High-throughput

0.513

High

271433

RL3
Large ribosomal subunit protein uL3

1

0

High-throughput

0.513

High

271434

RL13A
Large ribosomal subunit protein uL13

1

0

High-throughput

0.513

High

271438

RS27
Small ribosomal subunit protein eS27

1

0

High-throughput

0.513

High

271439

RL35
Large ribosomal subunit protein uL29

1

0

High-throughput

0.513

High

271442

RAGP1
Ran GTPase-activating protein 1

1

0

High-throughput

0.513

High

271443

RL27A
Large ribosomal subunit protein uL15

1

0

High-throughput

0.513

High

271444

RL5
Large ribosomal subunit protein uL18

1

0

High-throughput

0.513

High

271445

RL21
Large ribosomal subunit protein eL21

1

0

High-throughput

0.513

High

271446

RL28
Large ribosomal subunit protein eL28

1

0

High-throughput

0.513

High

271447

RS9
Small ribosomal subunit protein uS4

1

0

High-throughput

0.513

High

271448

RS5
Small ribosomal subunit protein uS7

1

0

High-throughput

0.513

High

271449

RL29
Large ribosomal subunit protein eL29

1

0

High-throughput

0.513

High

271450

RL34
Large ribosomal subunit protein eL34

1

0

High-throughput

0.513

High

271451

F10A1
Hsc70-interacting protein

1

0

High-throughput

0.513

High

271452

RL14
Large ribosomal subunit protein eL14

1

0

High-throughput

0.513

High

271453

HCFC1
Host cell factor 1

1

0

High-throughput

0.513

High

271457

SYRC
Arginine--tRNA ligase, cytoplasmic

1

0

High-throughput

0.513

High

271458

EIF3B
Eukaryotic translation initiation factor 3 subunit B

1

0

High-throughput

0.513

High

271459

SYMC
Methionine--tRNA ligase, cytoplasmic

1

0

High-throughput

0.513

High

271460

SESN2
Sestrin-2

1

0

Small-scale

0.513

High

271462

RS20
Small ribosomal subunit protein uS10

1

0

High-throughput

0.513

High

271465

RL15
Large ribosomal subunit protein eL15

1

0

High-throughput

0.513

High

271466

RL27
Large ribosomal subunit protein eL27

1

0

High-throughput

0.513

High

271467

RL37A
Large ribosomal subunit protein eL43

1

0

High-throughput

0.513

High

271468

HNRPK
Heterogeneous nuclear ribonucleoprotein K

1

0

High-throughput

0.513

High

271470

RS7
Small ribosomal subunit protein eS7

1

0

High-throughput

0.513

High

271471

RS8
Small ribosomal subunit protein eS8

1

0

High-throughput

0.513

High

271472

RS15A
Small ribosomal subunit protein uS8

1

0

High-throughput

0.513

High

271473

RS16
Small ribosomal subunit protein uS9

1

0

High-throughput

0.513

High

271474

RS14
Small ribosomal subunit protein uS11

1

0

High-throughput

0.513

High

271475

RS23
Small ribosomal subunit protein uS12

1

0

High-throughput

0.513

High

271476

RS18
Small ribosomal subunit protein uS13

1

0

High-throughput

0.513

High

271477

RS13
Small ribosomal subunit protein uS15

1

0

High-throughput

0.513

High

271478

RUXE
Small nuclear ribonucleoprotein E

1

0

High-throughput

0.513

High

271479

RL7A
Large ribosomal subunit protein eL8

1

0

High-throughput

0.513

High

271480

RS4X
Small ribosomal subunit protein eS4, X isoform

1

0

High-throughput

0.513

High

271481

RL23A
Large ribosomal subunit protein uL23

1

0

High-throughput

0.513

High

271482

RS6
Small ribosomal subunit protein eS6

1

0

High-throughput

0.513

High

271483

RL23
Large ribosomal subunit protein uL14

1

0

High-throughput

0.513

High

271484

RS15
Small ribosomal subunit protein uS19

1

0

High-throughput

0.513

High

271485

RS24
Small ribosomal subunit protein eS24

1

0

High-throughput

0.513

High

271486

RS25
Small ribosomal subunit protein eS25

1

0

High-throughput

0.513

High

271487

RS26
Small ribosomal subunit protein eS26

1

0

High-throughput

0.513

High

271488

RS28
Small ribosomal subunit protein eS28

1

0

High-throughput

0.513

High

271489

RL30
Large ribosomal subunit protein eL30

1

0

High-throughput

0.513

High

271491

RL31
Large ribosomal subunit protein eL31

1

0

High-throughput

0.513

High

271492

RL10A
Large ribosomal subunit protein uL1

1

0

High-throughput

0.513

High

271493

RL32
Large ribosomal subunit protein eL32

1

0

High-throughput

0.513

High

271494

RL11
Large ribosomal subunit protein uL5

1

0

High-throughput

0.513

High

271495

RL8
Large ribosomal subunit protein uL2

1

0

High-throughput

0.513

High

271497

RL38
Large ribosomal subunit protein eL38

1

0

High-throughput

0.513

High

271498

RS21
Small ribosomal subunit protein eS21

1

0

High-throughput

0.513

High

271500

HMGN5
High mobility group nucleosome-binding domain-containing protein 5

1

0

High-throughput

0.513

High

271501

RL24
Large ribosomal subunit protein eL24

1

0

High-throughput

0.513

High

271502

RL19
Large ribosomal subunit protein eL19

1

0

High-throughput

0.513

High

271503

VIGLN
Vigilin

1

0

High-throughput

0.513

High

271504

RL18A
Large ribosomal subunit protein eL20

1

0

High-throughput

0.513

High

271506

IF4G1
Eukaryotic translation initiation factor 4 gamma 1

1

0

High-throughput

0.513

High

271508

RL18
Large ribosomal subunit protein eL18

1

0

High-throughput

0.513

High

271510

DHX9
ATP-dependent RNA helicase A

1

0

High-throughput

0.513

High

271511

AIMP1
Aminoacyl tRNA synthase complex-interacting multifunctional protein 1

1

0

High-throughput

0.513

High

271521

EIF3A
Eukaryotic translation initiation factor 3 subunit A

1

0

High-throughput

0.513

High

271522

CAPR1
Caprin-1

1

0

High-throughput

0.513

High

271525

NUMA1
Nuclear mitotic apparatus protein 1

1

0

High-throughput

0.513

High

271528

SYK
Lysine--tRNA ligase

1

0

High-throughput

0.513

High

271539

NUFP2
FMR1-interacting protein NUFIP2

1

0

High-throughput

0.513

High

271541

KTN1
Kinectin

1

0

High-throughput

0.513

High

271547

SERB1
SERPINE1 mRNA-binding protein 1

1

0

High-throughput

0.513

High

271553

BRK1
Protein BRICK1

1

0

High-throughput

0.513

High

271555

STAM1
Signal transducing adapter molecule 1

1

0

High-throughput

0.513

High

271559

CC124
Coiled-coil domain-containing protein 124

1

0

High-throughput

0.513

High

271582

SYLC
Leucine--tRNA ligase, cytoplasmic

1

0

High-throughput

0.513

High

271583

EIF3K
Eukaryotic translation initiation factor 3 subunit K

1

0

High-throughput

0.513

High

271585

EIF3L
Eukaryotic translation initiation factor 3 subunit L

1

0

High-throughput

0.513

High

271587

RL36
Large ribosomal subunit protein eL36

1

0

High-throughput

0.513

High

271590

YTHD2
YTH domain-containing family protein 2

1

0

High-throughput

0.513

High

271538

ATG9A
Autophagy-related protein 9A

1

0

High-throughput

0.493

High

271430

TGFR2
TGF-beta receptor type-2

1

0

High-throughput

0.493

High

81663

EIFCL
Eukaryotic translation initiation factor 3 subunit C-like protein

1

1

High-throughput

0.489

High

163672

TCRG1
Transcription elongation regulator 1

1

1

High-throughput

0.489

High

271431

RBMX
RNA-binding motif protein, X chromosome

1

2

High-throughput

0.489

High

271440

MATR3
Matrin-3

1

2

High-throughput

0.489

High

271454

ROA3
Heterogeneous nuclear ribonucleoprotein A3

1

4

High-throughput

0.489

High

271455

HNRPM
Heterogeneous nuclear ribonucleoprotein M

1

2

High-throughput

0.489

High

271529

SAFB1
Scaffold attachment factor B1

1

3

High-throughput

0.489

High

271393

A4
Amyloid-beta precursor protein

1

0

High-throughput

0.480

High

271407

TRI27
Zinc finger protein RFP

1

2

Small-scale

0.479

High

271415

PRPS3
Ribose-phosphate pyrophosphokinase 3

1

1

High-throughput

0.479

High

271422

RL13
Large ribosomal subunit protein eL13

1

1

High-throughput

0.479

High

271426

1433S
14-3-3 protein sigma

1

4

High-throughput

0.479

High

271436

LAP2B
Lamina-associated polypeptide 2, isoforms beta/gamma

1

1

High-throughput

0.479

High

271464

RS3A
Small ribosomal subunit protein eS1

1

1

High-throughput

0.479

High

271490

RL39
Large ribosomal subunit protein eL39

1

1

High-throughput

0.479

High

271496

1433Z
14-3-3 protein zeta/delta

1

4

High-throughput

0.479

High

271505

RL6
Large ribosomal subunit protein eL6

1

1

High-throughput

0.479

High

271518

NACA
Nascent polypeptide-associated complex subunit alpha

1

1

High-throughput

0.479

High

271527

TNIP1
TNFAIP3-interacting protein 1

1

1

High-throughput

0.479

High

271545

TAB3
TGF-beta-activated kinase 1 and MAP3K7-binding protein 3

1

1

Small-scale

0.479

High

271546

ENAH
Protein enabled homolog

1

2

High-throughput

0.479

High

271573

TRIM5
Tripartite motif-containing protein 5

1

2

Small-scale

0.479

High

271581

TAB2
TGF-beta-activated kinase 1 and MAP3K7-binding protein 2

1

2

Small-scale

0.479

High

271552

SMCR8
Guanine nucleotide exchange protein SMCR8

1

0

Small-scale

0.460

High

215464

EMC8
ER membrane protein complex subunit 8

1

0

High-throughput

0.458

High

271381

NIPS2
Protein NipSnap homolog 2

1

0

Small-scale

0.458

High

271388

ATG12
Ubiquitin-like protein ATG12

1

0

Small-scale

0.458

High

271390

STABP
STAM-binding protein

1

0

Small-scale

0.458

High

271402

UBC
Polyubiquitin-C [Cleaved into: Ubiquitin]

1

0

High-throughput

0.458

High

271420

TNR6
Tumor necrosis factor receptor superfamily member 6

1

0

High-throughput

0.458

High

271509

C1QBP
Complement component 1 Q subcomponent-binding protein, mitochondrial

1

0

Small-scale

0.458

High

271530

MK14
Mitogen-activated protein kinase 14

1

0

Small-scale

0.458

High

271550

BICD2
Protein bicaudal D homolog 2

1

0

High-throughput

0.458

High

271557

MUL1
Mitochondrial ubiquitin ligase activator of NFKB 1

1

0

Small-scale

0.458

High

271558

OTUL
Ubiquitin thioesterase otulin

1

0

Small-scale

0.458

High

271565

NECD
Necdin

1

0

High-throughput

0.458

High

271567

PHB2
Prohibitin-2

1

0

Small-scale

0.458

High

271568

ANM1
Protein arginine N-methyltransferase 1

1

0

High-throughput

0.458

High

271584

XPO7
Exportin-7

1

0

High-throughput

0.458

High

94400

D6RAT0
Small ribosomal subunit protein eS1

1

1

High-throughput

0.445

High

96564

NACAM
Nascent polypeptide-associated complex subunit alpha, muscle-specific form

1

2

High-throughput

0.445

High

271463

PRPS1
Ribose-phosphate pyrophosphokinase 1

1

1

High-throughput

0.445

High

271531

H2B2E
Histone H2B type 2-E

1

1

High-throughput

0.445

High

271533

H2B2F
Histone H2B type 2-F

1

1

High-throughput

0.445

High

271588

WIPI4
WD repeat domain phosphoinositide-interacting protein 4

1

2

High-throughput

0.445

High

271570

PCGF1
Polycomb group RING finger protein 1

1

3

High-throughput

0.437

High

271526

PSME4
Proteasome activator complex subunit 4

1

0

High-throughput

0.426

High

271554

TBCD5
TBC1 domain family member 5

1

0

Small-scale

0.426

High

271562

NRBF2
Nuclear receptor-binding factor 2

1

0

High-throughput

0.426

High

271564

PI3R4
Phosphoinositide 3-kinase regulatory subunit 4

1

0

High-throughput

0.426

High

354

A0A075B6E5
ENAH actin regulator

1

1

High-throughput

0.407

High

107251

F8VR69
Ribosomal protein L6

1

1

High-throughput

0.407

High

116368

H3BUK8
Large ribosomal subunit protein eL13

1

1

High-throughput

0.407

High

271435

LAP2A
Lamina-associated polypeptide 2, isoform alpha

1

1

High-throughput

0.407

High

271532

R39L5
Putative ribosomal protein eL39-like 5

1

1

High-throughput

0.407

High

64449

F221B
Protein FAM221B

2

0

High-throughput

0.328

High

271586

WASC3
WASH complex subunit 3

2

0

High-throughput

0.328

High

271387

MTA2
Metastasis-associated protein MTA2

1

0

High-throughput

0.279

Low

271534

HP1B3
Heterochromatin protein 1-binding protein 3

1

0

High-throughput

0.279

Low

271571

GNL3
Guanine nucleotide-binding protein-like 3

1

0

High-throughput

0.279

Low

271580

NCOA5
Nuclear receptor coactivator 5

1

0

High-throughput

0.279

Low

271441

CBX5
Chromobox protein homolog 5

1

0

High-throughput

0.268

Low

271549

OTOSP
Otospiralin

1

0

High-throughput

0.251

Low

271517

PTC1
Protein patched homolog 1

1

0

Small-scale

0.249

Low

271536

H2A2A
Histone H2A type 2-A

1

0

High-throughput

0.249

Low

271416

FGFR3
Fibroblast growth factor receptor 3

1

0

High-throughput

0.232

Low

271456

TCP4
Activated RNA polymerase II transcriptional coactivator p15

1

0

High-throughput

0.232

Low

271575

S6A16
Orphan sodium- and chloride-dependent neurotransmitter transporter NTT5

1

0

High-throughput

0.232

Low


Service provided by Combinatics, Japan

Last updated: 11Aug2025