Protein: VMP1
Vacuole membrane protein 1 (Transmembrane protein 49)

Gene: VMP1
Organism: Homo sapiens
Interactions: 204
UniProt ID: Q96GC9

Gene Ontology (top 5):
GO:0000045 - autophagosome assembly
GO:0000407 - phagophore assembly site
GO:0000421 - autophagosome membrane
GO:0005730 - nucleolus
GO:0005783 - endoplasmic reticulum

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

1391674

ERGI3
Endoplasmic reticulum-Golgi intermediate compartment protein 3

4

1

High-throughput

0.692

High

406922

MAS
Proto-oncogene Mas

2

4

High-throughput

0.628

High

851082

LPAR6
Lysophosphatidic acid receptor 6

2

2

High-throughput

0.611

High

1391661

S39A9
Zinc transporter ZIP9

2

1

High-throughput

0.606

High

596768

DPEP1
Dipeptidase 1

2

0

High-throughput

0.602

High

937593

CAD13
Cadherin-13

2

0

High-throughput

0.602

High

1126742

BECN1
Beclin-1

2

0

Small-scale

0.585

High

1386315

FAF2
FAS-associated factor 2

2

0

High-throughput

0.585

High

174044

AT2A1
Sarcoplasmic/endoplasmic reticulum calcium ATPase 1

2

2

Small-scale

0.584

High

360074

NB5R3
NADH-cytochrome b5 reductase 3

2

0

High-throughput

0.580

High

396703

ESR1
Estrogen receptor

2

1

High-throughput

0.571

High

1203079

TM41B
Transmembrane protein 41B

1

0

Small-scale

0.537

High

130207

PGRC1
Membrane-associated progesterone receptor component 1

1

1

High-throughput

0.536

High

181399

PGRC2
Membrane-associated progesterone receptor component 2

1

1

High-throughput

0.536

High

268933

FCG3B
Low affinity immunoglobulin gamma Fc region receptor III-B

1

1

High-throughput

0.536

High

278139

FLNB
Filamin-B

1

2

High-throughput

0.536

High

426031

PPBT
Alkaline phosphatase, tissue-nonspecific isozyme

1

2

High-throughput

0.536

High

426126

PPB1
Alkaline phosphatase, placental type

1

2

High-throughput

0.536

High

488336

PPBI
Intestinal-type alkaline phosphatase

1

2

High-throughput

0.536

High

637683

FLNA
Filamin-A

1

2

High-throughput

0.536

High

669049

FPR2
N-formyl peptide receptor 2

1

1

High-throughput

0.536

High

688614

NKG2A
NKG2-A/NKG2-B type II integral membrane protein

1

2

High-throughput

0.536

High

786774

PP1G
Serine/threonine-protein phosphatase PP1-gamma catalytic subunit

1

1

High-throughput

0.536

High

845532

PI2R
Prostacyclin receptor

1

1

High-throughput

0.536

High

866781

CAZA2
F-actin-capping protein subunit alpha-2

1

1

High-throughput

0.536

High

915156

CAZA1
F-actin-capping protein subunit alpha-1

1

1

High-throughput

0.536

High

958173

ARP3
Actin-related protein 3

1

1

High-throughput

0.536

High

958327

ARP2
Actin-related protein 2

1

1

High-throughput

0.536

High

967908

PP1A
Serine/threonine-protein phosphatase PP1-alpha catalytic subunit

1

1

High-throughput

0.536

High

995460

TPM4
Tropomyosin alpha-4 chain

1

8

High-throughput

0.536

High

1028843

SPTB2
Spectrin beta chain, non-erythrocytic 1

1

1

High-throughput

0.536

High

1040357

DYST
Dystonin

1

1

High-throughput

0.536

High

1052083

CALD1
Caldesmon

1

1

High-throughput

0.536

High

1181267

LRRF1
Leucine-rich repeat flightless-interacting protein 1

1

1

High-throughput

0.536

High

1201027

ACTBL
Beta-actin-like protein 2

1

1

High-throughput

0.536

High

1208053

CYTSB
Cytospin-B

1

2

High-throughput

0.536

High

1273856

MICA3
[F-actin]-monooxygenase MICAL3

1

1

High-throughput

0.536

High

1291864

P2RY8
S-geranylgeranyl-glutathione receptor P2RY8

1

2

High-throughput

0.536

High

1391645

COR1B
Coronin-1B

1

1

High-throughput

0.536

High

1391652

NMUR2
Neuromedin-U receptor 2

1

1

High-throughput

0.536

High

1391653

S22A4
Solute carrier family 22 member 4

1

2

High-throughput

0.536

High

1391666

VAPA
Vesicle-associated membrane protein-associated protein A

1

1

High-throughput

0.536

High

1391672

CLC2D
C-type lectin domain family 2 member D

1

1

High-throughput

0.536

High

1391677

GPR45
Probable G-protein coupled receptor 45

1

1

High-throughput

0.536

High

1058912

ZO1
Tight junction protein 1

1

0

Small-scale

0.516

High

179551

ARPC3
Actin-related protein 2/3 complex subunit 3

1

0

High-throughput

0.513

High

184898

SPTC1
Serine palmitoyltransferase 1

1

0

High-throughput

0.513

High

187157

PPM1G
Protein phosphatase 1G

1

0

High-throughput

0.513

High

208718

SI1L1
Signal-induced proliferation-associated 1-like protein 1

1

0

High-throughput

0.513

High

248613

FADS1
Acyl-CoA

1

0

High-throughput

0.513

High

270389

WDR1
WD repeat-containing protein 1

1

0

High-throughput

0.513

High

271171

COBL
Protein cordon-bleu

1

0

High-throughput

0.513

High

281637

MTX2
Metaxin-2

1

0

High-throughput

0.513

High

442438

GELS
Gelsolin

1

0

High-throughput

0.513

High

702031

TMOD1
Tropomodulin-1

1

0

High-throughput

0.513

High

702148

ITPI2
Protein ITPRID2

1

0

High-throughput

0.513

High

724154

SDHA
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial

1

0

High-throughput

0.513

High

749258

CD70
CD70 antigen

1

0

High-throughput

0.513

High

771203

APJ
Apelin receptor

1

0

High-throughput

0.513

High

773955

SOAT1
Sterol O-acyltransferase 1

1

0

High-throughput

0.513

High

839340

MTOR
Serine/threonine-protein kinase mTOR

1

0

High-throughput

0.513

High

845103

EAA3
Excitatory amino acid transporter 3

1

0

High-throughput

0.513

High

862934

IQGA1
Ras GTPase-activating-like protein IQGAP1

1

0

High-throughput

0.513

High

867338

CAPZB
F-actin-capping protein subunit beta

1

0

High-throughput

0.513

High

880185

PTH2R
Parathyroid hormone 2 receptor

1

0

High-throughput

0.513

High

928805

CA2D1
Voltage-dependent calcium channel subunit alpha-2/delta-1

1

0

High-throughput

0.513

High

961560

VA0D1
V-type proton ATPase subunit d 1

1

0

High-throughput

0.513

High

1010348

BASP1
Brain acid soluble protein 1

1

0

High-throughput

0.513

High

1083522

BST2
Bone marrow stromal antigen 2

1

0

High-throughput

0.513

High

1107594

PICAL
Phosphatidylinositol-binding clathrin assembly protein

1

0

High-throughput

0.513

High

1108515

NAR3
Ecto-ADP-ribosyltransferase 3

1

0

High-throughput

0.513

High

1124688

SRC8
Src substrate cortactin

1

0

High-throughput

0.513

High

1129020

ITPR1
Inositol 1,4,5-trisphosphate-gated calcium channel ITPR1

1

0

High-throughput

0.513

High

1130382

RRP1B
Ribosomal RNA processing protein 1 homolog B

1

0

High-throughput

0.513

High

1143470

PCM1
Pericentriolar material 1 protein

1

0

High-throughput

0.513

High

1251505

CD109
CD109 antigen

1

0

High-throughput

0.513

High

1272619

PCAT2
Lysophosphatidylcholine acyltransferase 2

1

0

High-throughput

0.513

High

1324842

LRC25
Leucine-rich repeat-containing protein 25

1

0

High-throughput

0.513

High

1325895

MFD4A
Major facilitator superfamily domain-containing protein 4A

1

0

High-throughput

0.513

High

1327927

CISD2
CDGSH iron-sulfur domain-containing protein 2

1

0

High-throughput

0.513

High

1349091

F174A
Membrane protein FAM174A

1

0

High-throughput

0.513

High

1350035

SPP2B
Signal peptide peptidase-like 2B

1

0

High-throughput

0.513

High

1356975

PDC6I
Programmed cell death 6-interacting protein

1

0

High-throughput

0.513

High

1359145

GLMP
Glycosylated lysosomal membrane protein

1

0

High-throughput

0.513

High

1388151

CKLF5
CKLF-like MARVEL transmembrane domain-containing protein 5

1

0

High-throughput

0.513

High

1391649

WDR18
WD repeat-containing protein 18

1

0

High-throughput

0.513

High

1391650

CCG6
Voltage-dependent calcium channel gamma-6 subunit

1

0

High-throughput

0.513

High

1391660

RAB18
Ras-related protein Rab-18

1

0

High-throughput

0.513

High

1391676

SAM50
Sorting and assembly machinery component 50 homolog

1

0

High-throughput

0.513

High

230720

NKG2F
NKG2-F type II integral membrane protein

1

1

High-throughput

0.489

High

977793

ACTA
Actin, aortic smooth muscle

1

1

High-throughput

0.489

High

1229846

CYTSA
Cytospin-A

1

1

High-throughput

0.489

High

1242422

RHGBA
Rho GTPase-activating protein 11A

1

1

High-throughput

0.489

High

1369127

COR2A
Coronin-2A

1

1

High-throughput

0.489

High

1391678

LRRF2
Leucine-rich repeat flightless-interacting protein 2

1

1

High-throughput

0.489

High

48738

ESYT2
Extended synaptotagmin-2

1

1

High-throughput

0.479

High

562309

LAMP2
Lysosome-associated membrane glycoprotein 2

1

1

High-throughput

0.479

High

581228

RAC2
Ras-related C3 botulinum toxin substrate 2

1

1

High-throughput

0.479

High

598176

AT2A2
Sarcoplasmic/endoplasmic reticulum calcium ATPase 2

1

2

Small-scale

0.479

High

634576

LMNB1
Lamin-B1

1

1

High-throughput

0.479

High

774553

BASI
Basigin

1

1

High-throughput

0.479

High

901479

RAB7A
Ras-related protein Rab-7a

1

1

High-throughput

0.479

High

962374

RHOA
Transforming protein RhoA

1

1

High-throughput

0.479

High

1082560

NEXN
Nexilin

1

1

High-throughput

0.479

High

1372365

AT2A3
Sarcoplasmic/endoplasmic reticulum calcium ATPase 3

1

2

Small-scale

0.479

High

1381486

ERGI1
Endoplasmic reticulum-Golgi intermediate compartment protein 1

1

1

High-throughput

0.479

High

1391646

ESYT1
Extended synaptotagmin-1

1

1

High-throughput

0.479

High

1391658

RHOJ
Rho-related GTP-binding protein RhoJ

1

2

High-throughput

0.479

High

1391663

LYAR
Cell growth-regulating nucleolar protein

1

1

High-throughput

0.479

High

1391673

LAMP3
Lysosome-associated membrane glycoprotein 3

1

1

High-throughput

0.479

High

1232520

Q6FHY5
MEOX2 protein

1

1

High-throughput

0.470

High

142653

SARCO
Sarcolipin

1

0

Small-scale

0.458

High

189771

STX7
Syntaxin-7

1

0

High-throughput

0.458

High

218619

TGON2
Trans-Golgi network integral membrane protein 2

1

0

High-throughput

0.458

High

291484

NU155
Nuclear pore complex protein Nup155

1

0

High-throughput

0.458

High

417672

RPN1
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

1

0

High-throughput

0.458

High

418353

RPN2
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2

1

0

High-throughput

0.458

High

451048

LDHB
L-lactate dehydrogenase B chain

1

0

Small-scale

0.458

High

688409

PPLA
Phospholamban

1

0

Small-scale

0.458

High

820715

CEAM6
Cell adhesion molecule CEACAM6

1

0

High-throughput

0.458

High

847644

SSRA
Translocon-associated protein subunit alpha

1

0

High-throughput

0.458

High

894967

EMD
Emerin

1

0

High-throughput

0.458

High

900985

RAB5C
Ras-related protein Rab-5C

1

0

High-throughput

0.458

High

904065

BAP31
B-cell receptor-associated protein 31

1

0

High-throughput

0.458

High

951346

SC61B
Protein transport protein Sec61 subunit beta

1

0

High-throughput

0.458

High

1027132

REEP5
Receptor expression-enhancing protein 5

1

0

High-throughput

0.458

High

1058587

CKAP4
Cytoskeleton-associated protein 4

1

0

High-throughput

0.458

High

1111655

STIM1
Stromal interaction molecule 1

1

0

High-throughput

0.458

High

1132889

CHD4
Chromodomain-helicase-DNA-binding protein 4

1

0

High-throughput

0.458

High

1163392

CAH9
Carbonic anhydrase 9

1

0

High-throughput

0.458

High

1163971

DDR2
Discoidin domain-containing receptor 2

1

0

Small-scale

0.458

High

1322941

CXD3
Gap junction delta-3 protein

1

0

High-throughput

0.458

High

1333947

DHB11
Estradiol 17-beta-dehydrogenase 11

1

0

High-throughput

0.458

High

1365488

EDEM1
ER degradation-enhancing alpha-mannosidase-like protein 1

1

0

High-throughput

0.458

High

1383004

LRC59
Leucine-rich repeat-containing protein 59

1

0

High-throughput

0.458

High

1391643

PANX1
Pannexin-1

1

0

High-throughput

0.458

High

1391644

SEC62
Translocation protein SEC62

1

0

High-throughput

0.458

High

1391648

DERL1
Derlin-1

1

0

High-throughput

0.458

High

1391656

3BHS7
3 beta-hydroxysteroid dehydrogenase type 7

1

0

High-throughput

0.458

High

1391657

MLP3A
Microtubule-associated protein 1 light chain 3 alpha

1

0

Small-scale

0.458

High

1391659

TMT1A
Thiol S-methyltransferase TMT1A

1

0

High-throughput

0.458

High

1391664

ELOV5
Very long chain fatty acid elongase 5

1

0

High-throughput

0.458

High

1391665

DTL
Denticleless protein homolog

1

0

Small-scale

0.458

High

1391667

TM216
Transmembrane protein 216

1

0

High-throughput

0.458

High

1391669

B3GA1
Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1

1

0

High-throughput

0.458

High

91860

C9JVY5
PALM2 and AKAP2 fusion

1

1

High-throughput

0.445

High

303271

S22A5
Organic cation/carnitine transporter 2

1

2

High-throughput

0.445

High

1363419

S39A7
Zinc transporter SLC39A7

1

1

High-throughput

0.445

High

386089

LMNA
Prelamin-A/C [Cleaved into: Lamin-A/C

1

1

High-throughput

0.439

High

894091

MEOX2
Homeobox protein MOX-2

1

1

High-throughput

0.439

High

447832

TPM3
Tropomyosin alpha-3 chain

1

9

High-throughput

0.437

High

464196

TPM2
Tropomyosin beta chain

1

9

High-throughput

0.437

High

482950

TPM1
Tropomyosin alpha-1 chain

1

9

High-throughput

0.437

High

1238775

TECT3
Tectonic-3

1

1

High-throughput

0.437

High

1367009

ESR2
Estrogen receptor beta

1

1

High-throughput

0.437

High

1391642

TECT2
Tectonic-2

1

1

High-throughput

0.437

High

1391654

RGAP1
Rac GTPase-activating protein 1

1

1

High-throughput

0.437

High

1391675

PLAK2
PALM2-AKAP2 fusion protein

1

1

High-throughput

0.437

High

564204

CFTR
Cystic fibrosis transmembrane conductance regulator

1

0

High-throughput

0.426

High

1337305

PK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3

1

0

Small-scale

0.426

High

3296

A0A0S2Z4G4
Tropomyosin 3 isoform 1

1

8

High-throughput

0.407

High

69596

A8K3Y5
Cell growth-regulating nucleolar protein

1

1

High-throughput

0.407

High

85182

B7Z6G4
cDNA FLJ53193, highly similar to Homo sapiens caldesmon 1

1

1

High-throughput

0.407

High

95975

E7EUA0
Nexilin F-actin binding protein

1

1

High-throughput

0.407

High

104395

F5H7S3
Tropomyosin 1

1

8

High-throughput

0.407

High

107283

F8VRD2
Rac GTPase activating protein 1

1

1

High-throughput

0.407

High

116752

I3L192
Basigin

1

1

High-throughput

0.407

High

117273

K7ELP0
Tropomyosin 4

1

5

High-throughput

0.407

High

117301

K7ENT6
Tropomyosin 4

1

8

High-throughput

0.407

High

1252585

Q6ZN40
Tropomyosin 1

1

8

High-throughput

0.407

High

1308935

S22A9
Organic anion transporter 7

1

2

High-throughput

0.407

High

1391679

V9HW25
Epididymis secretory protein Li 273

1

9

High-throughput

0.407

High

1391671

KLK11
Kallikrein-11

2

0

High-throughput

0.318

High

1207583

F209A
Protein FAM209A

2

0

High-throughput

0.316

High

51101

PKHG3
Pleckstrin homology domain-containing family G member 3

1

0

High-throughput

0.279

Low

179240

ARC1B
Actin-related protein 2/3 complex subunit 1B

1

0

High-throughput

0.279

Low

179387

ARPC2
Actin-related protein 2/3 complex subunit 2

1

0

High-throughput

0.279

Low

192739

ARPC5
Actin-related protein 2/3 complex subunit 5

1

0

High-throughput

0.279

Low

539088

UMPS
Uridine 5'-monophosphate synthase

1

0

High-throughput

0.279

Low

848547

MAGA8
Melanoma-associated antigen 8

1

0

High-throughput

0.279

Low

884196

SRP09
Signal recognition particle 9 kDa protein

1

0

High-throughput

0.279

Low

948459

ARPC4
Actin-related protein 2/3 complex subunit 4

1

0

High-throughput

0.279

Low

984650

RL39
Large ribosomal subunit protein eL39

1

0

High-throughput

0.279

Low

1035841

KIF23
Kinesin-like protein KIF23

1

0

High-throughput

0.279

Low

1157713

CSRP2
Cysteine and glycine-rich protein 2

1

0

High-throughput

0.279

Low

1256440

CRACD
Capping protein-inhibiting regulator of actin dynamics

1

0

High-throughput

0.279

Low

1272834

DHX32
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32

1

0

High-throughput

0.279

Low

1310308

HSC20
Iron-sulfur cluster co-chaperone protein HscB

1

0

High-throughput

0.279

Low

1327346

AFAP1
Actin filament-associated protein 1

1

0

High-throughput

0.279

Low

1328592

RFLB
Refilin-B

1

0

High-throughput

0.279

Low

1391651

K1671
Uncharacterized protein KIAA1671

1

0

High-throughput

0.279

Low

1391655

TARA
TRIO and F-actin-binding protein

1

0

High-throughput

0.279

Low

1391668

TMEM9
Proton-transporting V-type ATPase complex assembly regulator TMEM9

1

0

High-throughput

0.279

Low

169697

HGS
Hepatocyte growth factor-regulated tyrosine kinase substrate

1

0

Small-scale

0.261

Low

831232

CCNF
Cyclin-F

1

0

High-throughput

0.249

Low

1004961

RNF4
E3 ubiquitin-protein ligase RNF4

1

0

High-throughput

0.249

Low

1162483

CLPP
ATP-dependent Clp protease proteolytic subunit, mitochondrial

1

0

High-throughput

0.249

Low

1229625

VIR
Protein virilizer homolog

1

0

High-throughput

0.249

Low

1255047

TRI67
Tripartite motif-containing protein 67

1

0

High-throughput

0.249

Low

1312576

FA20C
Extracellular serine/threonine protein kinase FAM20C

1

0

High-throughput

0.249

Low

1391647

CNPY3
Protein canopy homolog 3

1

0

Small-scale

0.249

Low

1391662

OTULL
Inactive ubiquitin thioesterase OTULINL

1

0

High-throughput

0.249

Low

1391670

THA10
THAP domain-containing protein 10

1

0

Small-scale

0.249

Low

76651

B4E106
Monocarboxylate transporter 1

1

0

High-throughput

0.232

Low


Service provided by Combinatics, Japan

Last updated: 11Aug2025