Protein: UBP47
Ubiquitin carboxyl-terminal hydrolase 47 (EC 3.4.19.12) (Deubiquitinating enzyme 47) (Ubiquitin thioesterase 47) (Ubiquitin-specific-processing protease 47)

Gene: UBP47, USP47
Organism: Homo sapiens
Interactions: 164
UniProt ID: Q96K76

Gene Ontology (top 5):
GO:0004843 - cysteine-type deubiquitinase activity
GO:0005634 - nucleus
GO:0005654 - nucleoplasm
GO:0005737 - cytoplasm
GO:0005829 - cytosol

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

1395785

FBW1B
F-box/WD repeat-containing protein 11

10

9

Small-scale

0.972

High

1395788

FBW1A
F-box/WD repeat-containing protein 1A

6

7

Small-scale

0.949

High

1356065

DDI1
Protein DDI1 homolog 1

3

6

High-throughput

0.861

High

508451

UBC
Polyubiquitin-C [Cleaved into: Ubiquitin]

3

20

Small-scale

0.840

High

1051836

EF1A2
Elongation factor 1-alpha 2

2

9

High-throughput

0.811

High

242603

PRKN
E3 ubiquitin-protein ligase parkin

2

16

High-throughput

0.754

High

1395779

WRP73
WD repeat-containing protein WRAP73

2

2

High-throughput

0.737

High

1048064

TLE3
Transducin-like enhancer protein 3

1

10

Small-scale

0.724

High

125850

AP4M1
AP-4 complex subunit mu-1

3

1

High-throughput

0.675

High

170287

AURKA
Aurora kinase A

3

10

High-throughput

0.667

High

1046404

UBXN1
UBX domain-containing protein 1

3

2

High-throughput

0.667

High

1158161

MK14
Mitogen-activated protein kinase 14

3

5

High-throughput

0.667

High

1216191

DDI2
Protein DDI1 homolog 2

1

3

High-throughput

0.665

High

277466

AVIL
Advillin

3

6

High-throughput

0.662

High

1395757

INP5K
Inositol polyphosphate 5-phosphatase K

3

2

High-throughput

0.662

High

1395767

STN1
CST complex subunit STN1

3

0

High-throughput

0.638

High

227125

SYNC
Asparagine--tRNA ligase, cytoplasmic

2

2

High-throughput

0.628

High

626465

NCF2
Neutrophil cytosol factor 2

2

11

High-throughput

0.628

High

814562

FEN1
Flap endonuclease 1

2

1

High-throughput

0.628

High

854908

RECQ1
ATP-dependent DNA helicase Q1

2

13

High-throughput

0.628

High

1013095

HMGN5
High mobility group nucleosome-binding domain-containing protein 5

2

1

High-throughput

0.628

High

1024770

VIGLN
Vigilin

2

9

High-throughput

0.628

High

1091790

PP1R8
Nuclear inhibitor of protein phosphatase 1

2

2

High-throughput

0.628

High

1129113

PLSI
Plastin-1

2

11

High-throughput

0.628

High

1129699

MDC1
Mediator of DNA damage checkpoint protein 1

2

12

High-throughput

0.628

High

1132629

KIF22
Kinesin-like protein KIF22

2

6

High-throughput

0.628

High

1153730

TOM34
Mitochondrial import receptor subunit TOM34

2

14

High-throughput

0.628

High

1154711

VAMP3
Vesicle-associated membrane protein 3

2

6

High-throughput

0.628

High

1350261

RHPN1
Rhophilin-1

2

3

High-throughput

0.628

High

1391010

OTUB1
Ubiquitin thioesterase OTUB1

2

3

High-throughput

0.628

High

1395755

DNJC2
DnaJ homolog subfamily C member 2

2

8

High-throughput

0.628

High

1395756

VRK1
Serine/threonine-protein kinase VRK1

2

8

High-throughput

0.628

High

1395771

RPR1B
Regulation of nuclear pre-mRNA domain-containing protein 1B

2

1

High-throughput

0.628

High

1395775

RBM12
RNA-binding protein 12

2

14

High-throughput

0.628

High

1395776

TBCC1
TBCC domain-containing protein 1

2

1

High-throughput

0.628

High

1395786

MCTS1
Malignant T-cell-amplified sequence 1

2

1

High-throughput

0.628

High

1395787

SNX6
Sorting nexin-6

2

2

High-throughput

0.628

High

910166

RND2
Rho-related GTP-binding protein RhoN

2

15

High-throughput

0.612

High

1054769

SUH
Recombining binding protein suppressor of hairless

2

1

High-throughput

0.611

High

220710

DENR
Density-regulated protein

2

0

High-throughput

0.602

High

238587

RAD21
Double-strand-break repair protein rad21 homolog

2

0

High-throughput

0.602

High

925676

IST1
IST1 homolog

2

0

High-throughput

0.602

High

976764

ERF1
Eukaryotic peptide chain release factor subunit 1

2

0

High-throughput

0.602

High

1316049

TRM2A
tRNA

2

0

High-throughput

0.602

High

1361517

CTBL1
Beta-catenin-like protein 1

2

0

High-throughput

0.602

High

1382445

SYAP1
Synapse-associated protein 1

2

0

High-throughput

0.602

High

1395763

GATA
Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial

2

0

High-throughput

0.602

High

155870

DPYL4
Dihydropyrimidinase-related protein 4

2

7

High-throughput

0.601

High

1395781

ZRAN1
Ubiquitin thioesterase ZRANB1

2

9

High-throughput

0.584

High

1395789

TRAF6
TNF receptor-associated factor 6

2

20

Small-scale

0.584

High

210331

PHF1
PHD finger protein 1

2

0

High-throughput

0.576

High

1152838

NSDHL
Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating

2

1

High-throughput

0.574

High

1395769

LRC40
Leucine-rich repeat-containing protein 40

2

1

High-throughput

0.574

High

586833

RS2
Small ribosomal subunit protein uS5

1

2

Small-scale

0.561

High

239331

MYPT2
Protein phosphatase 1 regulatory subunit 12B

1

7

High-throughput

0.536

High

240113

KPRB
Phosphoribosyl pyrophosphate synthase-associated protein 2

1

5

High-throughput

0.536

High

249650

SNX3
Sorting nexin-3

1

2

High-throughput

0.536

High

254410

CC14B
Dual specificity protein phosphatase CDC14B

1

12

High-throughput

0.536

High

651134

CCNO
Cyclin-O

1

4

High-throughput

0.536

High

654668

TCEA1
Transcription elongation factor A protein 1

1

3

High-throughput

0.536

High

720792

PUR8
Adenylosuccinate lyase

1

1

High-throughput

0.536

High

961207

FGF12
Fibroblast growth factor 12

1

4

High-throughput

0.536

High

1017468

FOXK1
Forkhead box protein K1

1

12

High-throughput

0.536

High

1029729

FOXK2
Forkhead box protein K2

1

11

High-throughput

0.536

High

1097224

PAK2
Serine/threonine-protein kinase PAK 2

1

7

High-throughput

0.536

High

1141864

EEA1
Early endosome antigen 1

1

16

High-throughput

0.536

High

1339139

NUP35
Nucleoporin NUP35

1

1

High-throughput

0.536

High

1395754

RPR1A
Regulation of nuclear pre-mRNA domain-containing protein 1A

1

1

High-throughput

0.536

High

1395760

NAA15
N-alpha-acetyltransferase 15, NatA auxiliary subunit

1

8

High-throughput

0.536

High

1395761

SHAN3
SH3 and multiple ankyrin repeat domains protein 3

1

5

High-throughput

0.536

High

1395770

UBE2T
Ubiquitin-conjugating enzyme E2 T

1

8

High-throughput

0.536

High

1395773

HELLS
Lymphoid-specific helicase

1

6

High-throughput

0.536

High

1395780

HDAC6
Protein deacetylase HDAC6

1

12

High-throughput

0.536

High

1395790

PPME1
Protein phosphatase methylesterase 1

1

1

High-throughput

0.536

High

1395792

SAR1B
Small COPII coat GTPase SAR1B

1

5

High-throughput

0.536

High

219219

LTOR5
Ragulator complex protein LAMTOR5

1

0

High-throughput

0.513

High

288862

LYPA1
Acyl-protein thioesterase 1

1

0

High-throughput

0.513

High

360078

NB5R3
NADH-cytochrome b5 reductase 3

1

0

High-throughput

0.513

High

1088726

SF3A3
Splicing factor 3A subunit 3

1

0

High-throughput

0.513

High

1131698

2A5D
Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform

1

0

High-throughput

0.513

High

1162497

CLPP
ATP-dependent Clp protease proteolytic subunit, mitochondrial

1

0

High-throughput

0.513

High

1390133

ADAT3
Probable inactive tRNA-specific adenosine deaminase-like protein 3

1

0

High-throughput

0.513

High

1395766

F124B
Protein FAM124B

1

0

High-throughput

0.513

High

1395774

SYFB
Phenylalanine--tRNA ligase beta subunit

1

0

High-throughput

0.513

High

1395777

HPF1
Histone PARylation factor 1

1

0

High-throughput

0.513

High

1395791

PUS1
Pseudouridylate synthase 1 homolog

1

0

High-throughput

0.513

High

1239102

HIBCH
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial

1

5

High-throughput

0.489

High

1260716

KNDC1
Kinase non-catalytic C-lobe domain-containing protein 1

1

9

High-throughput

0.489

High

1385418

EFHD2
EF-hand domain-containing protein D2

1

6

High-throughput

0.489

High

1395758

URM1
Ubiquitin-related modifier 1

1

0

Small-scale

0.479

High

58744

PTPC1
Protein tyrosine phosphatase domain-containing protein 1

1

12

High-throughput

0.479

High

166555

BACH1
Transcription regulator protein BACH1

1

19

Small-scale

0.479

High

172177

HNRDL
Heterogeneous nuclear ribonucleoprotein D-like

1

19

High-throughput

0.479

High

173237

XPO1
Exportin-1

1

4

High-throughput

0.479

High

176084

KDM6B
Lysine-specific demethylase 6B

1

14

Small-scale

0.479

High

279464

TULP3
Tubby-related protein 3

1

1

High-throughput

0.479

High

282480

KTNA1
Katanin p60 ATPase-containing subunit A1

1

6

Small-scale

0.479

High

292321

TCEA3
Transcription elongation factor A protein 3

1

3

Small-scale

0.479

High

296675

AL1L1
Cytosolic 10-formyltetrahydrofolate dehydrogenase

1

4

Small-scale

0.479

High

404330

GCR
Glucocorticoid receptor

1

15

High-throughput

0.479

High

582924

EZRI
Ezrin

1

7

High-throughput

0.479

High

589428

RFA2
Replication protein A 32 kDa subunit

1

8

High-throughput

0.479

High

607631

PTN2
Tyrosine-protein phosphatase non-receptor type 2

1

1

High-throughput

0.479

High

691338

1433T
14-3-3 protein theta

1

19

High-throughput

0.479

High

696231

RFA1
Replication protein A 70 kDa DNA-binding subunit

1

7

High-throughput

0.479

High

730148

1433B
14-3-3 protein beta/alpha

1

19

High-throughput

0.479

High

730830

1433S
14-3-3 protein sigma

1

19

High-throughput

0.479

High

762036

GRK5
G protein-coupled receptor kinase 5

1

7

High-throughput

0.479

High

768911

RFA3
Replication protein A 14 kDa subunit

1

6

High-throughput

0.479

High

831254

CCNF
Cyclin-F

1

7

High-throughput

0.479

High

857536

NOTC1
Neurogenic locus notch homolog protein 1

1

8

Small-scale

0.479

High

862381

YAP1
Transcriptional coactivator YAP1

1

20

Small-scale

0.479

High

981922

RL23
Large ribosomal subunit protein uL14

1

1

High-throughput

0.479

High

985817

RL11
Large ribosomal subunit protein uL5

1

2

Small-scale

0.479

High

986636

PPIA
Peptidyl-prolyl cis-trans isomerase A

1

4

High-throughput

0.479

High

990608

1433Z
14-3-3 protein zeta/delta

1

19

High-throughput

0.479

High

994729

YBOX1
Y-box-binding protein 1

1

4

Small-scale

0.479

High

1022773

XIAP
E3 ubiquitin-protein ligase XIAP

1

16

Small-scale

0.479

High

1053722

PTN11
Tyrosine-protein phosphatase non-receptor type 11

1

1

High-throughput

0.479

High

1062840

QOR
Quinone oxidoreductase

1

5

High-throughput

0.479

High

1091833

TP4A2
Protein tyrosine phosphatase type IVA 2

1

11

High-throughput

0.479

High

1094958

TRAF3
TNF receptor-associated factor 3

1

20

Small-scale

0.479

High

1095045

DUS4
Dual specificity protein phosphatase 4

1

8

High-throughput

0.479

High

1152028

PTN14
Tyrosine-protein phosphatase non-receptor type 14

1

8

High-throughput

0.479

High

1161876

DUS5
Dual specificity protein phosphatase 5

1

9

High-throughput

0.479

High

1179632

RGPA2
Ral GTPase-activating protein subunit alpha-2

1

2

High-throughput

0.479

High

1243118

ALKB5
RNA demethylase ALKBH5

1

1

Small-scale

0.479

High

1255097

TRI67
Tripartite motif-containing protein 67

1

20

High-throughput

0.479

High

1258368

MOB3C
MOB kinase activator 3C

1

2

High-throughput

0.479

High

1334785

SERB1
SERPINE1 mRNA-binding protein 1

1

4

High-throughput

0.479

High

1369573

ATOH1
Transcription factor ATOH1

1

1

Small-scale

0.479

High

1385828

CHM4C
Charged multivesicular body protein 4c

1

2

High-throughput

0.479

High

1395762

TRI31
E3 ubiquitin-protein ligase TRIM31

1

20

High-throughput

0.479

High

1395764

DUS15
Dual specificity protein phosphatase 15

1

7

High-throughput

0.479

High

1395765

VP33B
Vacuolar protein sorting-associated protein 33B

1

3

High-throughput

0.479

High

1395768

EGLN3
Prolyl hydroxylase EGLN3

1

4

High-throughput

0.479

High

1395772

SIR7
NAD-dependent protein deacetylase sirtuin-7

1

13

High-throughput

0.479

High

1395782

DS13B
Dual specificity protein phosphatase 13B

1

9

High-throughput

0.479

High

1395783

CNOT7
CCR4-NOT transcription complex subunit 7

1

1

High-throughput

0.479

High

1395784

HOOK1
Protein Hook homolog 1

1

20

High-throughput

0.479

High

1142365

PDIA6
Protein disulfide-isomerase A6

1

2

High-throughput

0.470

High

1395778

COKA1

1

4

High-throughput

0.470

High

446538

DPOLB
DNA polymerase beta

1

0

Small-scale

0.458

High

1032771

SATB1
DNA-binding protein SATB1

1

0

Small-scale

0.458

High

1095168

RED
Protein Red

1

0

Small-scale

0.458

High

1335508

MTMRE
Phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR14

1

0

High-throughput

0.458

High

572751

PA2GA
Phospholipase A2, membrane associated

1

3

Small-scale

0.457

High

877202

KC1D
Casein kinase I isoform delta

1

5

High-throughput

0.445

High

992304

SKP1
S-phase kinase-associated protein 1

1

1

High-throughput

0.445

High

1152457

T22D1
TSC22 domain family protein 1

1

10

Small-scale

0.445

High

1239275

ARMC6
Armadillo repeat-containing protein 6

1

1

High-throughput

0.445

High

1315702

DND1
Dead end protein homolog 1

1

7

High-throughput

0.445

High

412446

NTRK1
High affinity nerve growth factor receptor

1

8

High-throughput

0.437

High

1204587

PIGG
GPI ethanolamine phosphate transferase 2, catalytic subunit

1

2

High-throughput

0.437

High

1395759

KIFC3
Kinesin-like protein KIFC3

1

6

Small-scale

0.437

High

791635

SYUA
Alpha-synuclein

1

6

Small-scale

0.408

High

505969

MYZAP
Myocardial zonula adherens protein

1

19

High-throughput

0.407

High

1293595

HOGA1
4-hydroxy-2-oxoglutarate aldolase, mitochondrial

3

0

High-throughput

0.345

High

1232005

GL1AD
DNA-directed RNA polymerase II subunit GRINL1A, isoforms 4/5

3

0

High-throughput

0.334

High

329333

LETM1
Mitochondrial proton/calcium exchanger protein

2

0

High-throughput

0.328

High

1180357

ASTE1
Single-strand DNA endonuclease ASTE1

2

0

High-throughput

0.328

High

1347803

SPT20
Spermatogenesis-associated protein 20

2

0

High-throughput

0.328

High

506022

GRL1A
DNA-directed RNA polymerase II subunit GRINL1A

2

0

High-throughput

0.288

High

947036

DSCR9
Down syndrome critical region protein 9

1

0

High-throughput

0.238

Low


Service provided by Combinatics, Japan

Last updated: 11Aug2025