Protein: NUP93
Nuclear pore complex protein Nup93 (93 kDa nucleoporin) (Nucleoporin Nup93)

Gene: NUP93
Organism: Homo sapiens
Interactions: 240
UniProt ID: Q8N1F7

Gene Ontology (top 5):
GO:0005635 - nuclear envelope
GO:0005643 - nuclear pore
GO:0005813 - centrosome
GO:0005829 - cytosol
GO:0006606 - protein import into nucleus

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

291429

NU155
Nuclear pore complex protein Nup155

2

4

High-throughput

0.754

High

945271

NU107
Nuclear pore complex protein Nup107

1

1

High-throughput

0.691

High

1323417

NUP35
Nucleoporin NUP35

4

2

Small-scale

0.687

High

1323425

NU205
Nuclear pore complex protein Nup205

1

3

Small-scale

0.647

High

242256

PRKN
E3 ubiquitin-protein ligase parkin

3

3

High-throughput

0.640

High

363559

EGFR
Epidermal growth factor receptor

3

1

Small-scale

0.640

High

1134275

IMB1
Importin subunit beta-1

2

3

High-throughput

0.628

High

173058

XPO1
Exportin-1

2

2

Small-scale

0.611

High

775570

NU214
Nuclear pore complex protein Nup214

2

5

Small-scale

0.611

High

976405

RB11A
Ras-related protein Rab-11A

2

0

High-throughput

0.585

High

1113664

CUL3
Cullin-3

2

0

High-throughput

0.585

High

537499

HSP7C
Heat shock cognate 71 kDa protein

2

1

High-throughput

0.584

High

1040848

MECOM
Histone-lysine N-methyltransferase MECOM

2

1

High-throughput

0.584

High

1323416

NUP43
Nucleoporin Nup43

2

2

High-throughput

0.584

High

254487

PLPL9
85/88 kDa calcium-independent phospholipase A2

2

0

High-throughput

0.580

High

1135524

RHG19
Rho GTPase-activating protein 19

2

2

High-throughput

0.571

High

831052

CCNF
Cyclin-F

2

0

High-throughput

0.559

High

1323469

ANLN
Anillin

2

0

High-throughput

0.559

High

1323477

PD1L1
Programmed cell death 1 ligand 1

1

1

Small-scale

0.553

High

1323434

OTUB1
Ubiquitin thioesterase OTUB1

2

0

High-throughput

0.547

High

634521

LMNB1
Lamin-B1

1

2

High-throughput

0.536

High

721034

CLIP1
CAP-Gly domain-containing linker protein 1

1

1

High-throughput

0.536

High

849372

RANG
Ran-specific GTPase-activating protein

1

2

High-throughput

0.536

High

872522

SOX2
Transcription factor SOX-2

1

1

High-throughput

0.536

High

890358

NU153
Nuclear pore complex protein Nup153

1

6

High-throughput

0.536

High

939941

TPTE
Putative tyrosine-protein phosphatase TPTE

1

3

High-throughput

0.536

High

965562

NTF2
Nuclear transport factor 2

1

1

High-throughput

0.536

High

981585

RAN
GTP-binding nuclear protein Ran

1

1

High-throughput

0.536

High

1038454

TIE2
Angiopoietin-1 receptor

1

5

High-throughput

0.536

High

1100891

G3BP1
Ras GTPase-activating protein-binding protein 1

1

1

High-throughput

0.536

High

1323433

SEH1
Nucleoporin SEH1

1

4

High-throughput

0.536

High

1323450

NUP58
Nucleoporin p58/p45

1

8

High-throughput

0.536

High

1155536

EZH2
Histone-lysine N-methyltransferase EZH2

2

2

High-throughput

0.533

High

1323410

ARG39
Rho guanine nucleotide exchange factor 39

2

4

High-throughput

0.521

High

1323422

DEP1B
DEP domain-containing protein 1B

2

3

High-throughput

0.521

High

1152441

T22D1
TSC22 domain family protein 1

1

1

High-throughput

0.515

High

1323444

PHB2
Prohibitin-2

1

1

High-throughput

0.515

High

219980

XRCC3
DNA repair protein XRCC3

1

0

High-throughput

0.513

High

361297

SODC
Superoxide dismutase [Cu-Zn]

1

0

High-throughput

0.513

High

788095

ODO2
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial

1

0

High-throughput

0.513

High

993649

UBC9
SUMO-conjugating enzyme UBC9

1

0

High-throughput

0.513

High

1101174

CLN3
Battenin

1

0

High-throughput

0.513

High

1134640

NUMA1
Nuclear mitotic apparatus protein 1

1

0

High-throughput

0.513

High

1152150

MARE1
Microtubule-associated protein RP/EB family member 1

1

0

High-throughput

0.513

High

1197526

PAN2
PAN2-PAN3 deadenylation complex catalytic subunit PAN2

1

0

High-throughput

0.513

High

1323442

CDC5L
Cell division cycle 5-like protein

1

0

High-throughput

0.513

High

167622

GIPC1
PDZ domain-containing protein GIPC1

1

0

High-throughput

0.493

High

885701

CASP4
Caspase-4

1

0

High-throughput

0.493

High

1323441

PNKP
Bifunctional polynucleotide phosphatase/kinase

1

0

High-throughput

0.493

High

1323468

NEK6
Serine/threonine-protein kinase Nek6

1

0

High-throughput

0.493

High

1323432

HDA11
Histone deacetylase 11

1

1

High-throughput

0.489

High

1323482

HDAC9
Histone deacetylase 9

1

1

High-throughput

0.489

High

58738

PTPC1
Protein tyrosine phosphatase domain-containing protein 1

1

3

High-throughput

0.479

High

285360

EED
Polycomb protein EED

1

2

High-throughput

0.479

High

385956

LMNA
Prelamin-A/C [Cleaved into: Lamin-A/C

1

2

High-throughput

0.479

High

410937

ERBB2
Receptor tyrosine-protein kinase erbB-2

1

1

High-throughput

0.479

High

477244

ROS1
Proto-oncogene tyrosine-protein kinase ROS

1

3

High-throughput

0.479

High

541586

FGFR1
Fibroblast growth factor receptor 1

1

7

High-throughput

0.479

High

552835

TPR
Nucleoprotein TPR

1

4

Small-scale

0.479

High

584566

VAV
Proto-oncogene vav

1

2

High-throughput

0.479

High

610019

VGFR1
Vascular endothelial growth factor receptor 1

1

5

High-throughput

0.479

High

730757

1433S
14-3-3 protein sigma

1

1

High-throughput

0.479

High

761260

RYK
Tyrosine-protein kinase RYK

1

5

Small-scale

0.479

High

765701

BMI1
Polycomb complex protein BMI-1

1

1

Small-scale

0.479

High

766686

PHB1
Prohibitin 1

1

1

High-throughput

0.479

High

774490

BASI
Basigin

1

1

High-throughput

0.479

High

789170

NUP62
Nuclear pore glycoprotein p62

1

8

Small-scale

0.479

High

789525

PPARG
Peroxisome proliferator-activated receptor gamma

1

1

Small-scale

0.479

High

901931

RAB9A
Ras-related protein Rab-9A

1

1

High-throughput

0.479

High

1007731

RAE1L
mRNA export factor RAE1

1

3

High-throughput

0.479

High

1137851

TNIP1
TNFAIP3-interacting protein 1

1

2

High-throughput

0.479

High

1178682

RHG31
Rho GTPase-activating protein 31

1

1

High-throughput

0.479

High

1227046

A16L1
Autophagy-related protein 16-1

1

1

High-throughput

0.479

High

1251925

LMTK1
Serine/threonine-protein kinase LMTK1

1

6

High-throughput

0.479

High

1259340

TBA1A
Tubulin alpha-1A chain

1

1

High-throughput

0.479

High

1288527

ZN598
E3 ubiquitin-protein ligase ZNF598

1

1

High-throughput

0.479

High

1310852

LMTK2
Serine/threonine-protein kinase LMTK2

1

6

High-throughput

0.479

High

1323409

NIN
Ninein

1

1

High-throughput

0.479

High

1323412

SIR6
NAD-dependent protein deacylase sirtuin-6

1

1

High-throughput

0.479

High

1323418

RIN3
Ras and Rab interactor 3

1

1

High-throughput

0.479

High

1323429

ARMC5
Armadillo repeat-containing protein 5

1

1

High-throughput

0.479

High

1323449

RN126
E3 ubiquitin-protein ligase RNF126

1

1

High-throughput

0.479

High

1323452

FACD2
Fanconi anemia group D2 protein

1

1

High-throughput

0.479

High

1323454

HOIL1
RanBP-type and C3HC4-type zinc finger-containing protein 1

1

1

High-throughput

0.479

High

1323464

ECT2
Protein ECT2

1

3

High-throughput

0.479

High

1323466

PRD16
Histone-lysine N-methyltransferase PRDM16

1

1

High-throughput

0.479

High

1323479

NXF1
Nuclear RNA export factor 1

1

1

Small-scale

0.479

High

1323480

ZRAN1
Ubiquitin thioesterase ZRANB1

1

1

High-throughput

0.479

High

1323483

PKHG1
Pleckstrin homology domain-containing family G member 1

1

1

High-throughput

0.479

High

1323485

HDAC5
Histone deacetylase 5

1

1

High-throughput

0.479

High

231152

AIRE
Autoimmune regulator

1

1

Small-scale

0.470

High

1323465

BRF2
Transcription factor IIIB 50 kDa subunit

1

1

High-throughput

0.470

High

129248

MEN1
Menin

1

0

High-throughput

0.458

High

134796

SAP18
Histone deacetylase complex subunit SAP18

1

0

High-throughput

0.458

High

157600

CTRO
Citron Rho-interacting kinase

1

0

High-throughput

0.458

High

166949

MGST3
Glutathione S-transferase 3, mitochondrial

1

0

High-throughput

0.458

High

179968

BET1
BET1 homolog

1

0

High-throughput

0.458

High

190991

RPA34
DNA-directed RNA polymerase I subunit RPA34

1

0

High-throughput

0.458

High

272318

OBSL1
Obscurin-like protein 1

1

0

High-throughput

0.458

High

297650

PIAS1
E3 SUMO-protein ligase PIAS1

1

0

High-throughput

0.458

High

315769

RECQ4
ATP-dependent DNA helicase Q4

1

0

High-throughput

0.458

High

320571

FARP2
FERM, ARHGEF and pleckstrin domain-containing protein 2

1

0

High-throughput

0.458

High

346060

STAU1
Double-stranded RNA-binding protein Staufen homolog 1

1

0

High-throughput

0.458

High

347805

BAG3
BAG family molecular chaperone regulator 3

1

0

High-throughput

0.458

High

350069

SNAI1
Zinc finger protein SNAI1

1

0

High-throughput

0.458

High

401131

RAF1
RAF proto-oncogene serine/threonine-protein kinase

1

0

High-throughput

0.458

High

414191

P53
Cellular tumor antigen p53

1

0

Small-scale

0.458

High

415711

HSPB1
Heat shock protein beta-1

1

0

Small-scale

0.458

High

437269

K2C8
Keratin, type II cytoskeletal 8

1

0

High-throughput

0.458

High

458444

ADRB2
Beta-2 adrenergic receptor

1

0

High-throughput

0.458

High

565422

ITA4
Integrin alpha-4

1

0

High-throughput

0.458

High

675078

TNR6
Tumor necrosis factor receptor superfamily member 6

1

0

High-throughput

0.458

High

693025

DPP4
Dipeptidyl peptidase 4

1

0

High-throughput

0.458

High

719351

MPIP3
M-phase inducer phosphatase 3

1

0

High-throughput

0.458

High

731455

STIP1
Stress-induced-phosphoprotein 1

1

0

High-throughput

0.458

High

764885

CTNB1
Catenin beta-1

1

0

High-throughput

0.458

High

799976

COIL
Coilin

1

0

High-throughput

0.458

High

861218

MAP1B
Microtubule-associated protein 1B

1

0

High-throughput

0.458

High

883280

UB2R1
Ubiquitin-conjugating enzyme E2 R1

1

0

High-throughput

0.458

High

941930

PEX3
Peroxisomal biogenesis factor 3

1

0

High-throughput

0.458

High

970763

UBE2H
Ubiquitin-conjugating enzyme E2 H

1

0

High-throughput

0.458

High

975121

ARF6
ADP-ribosylation factor 6

1

0

High-throughput

0.458

High

979970

H4
Histone H4

1

0

High-throughput

0.458

High

983881

RBX1
E3 ubiquitin-protein ligase RBX1

1

0

High-throughput

0.458

High

1096590

AIMP2
Aminoacyl tRNA synthase complex-interacting multifunctional protein 2

1

0

High-throughput

0.458

High

1104439

ILK
Scaffold protein ILK

1

0

High-throughput

0.458

High

1107014

BIRC3
Baculoviral IAP repeat-containing protein 3

1

0

High-throughput

0.458

High

1134981

CUL7
Cullin-7

1

0

High-throughput

0.458

High

1140545

KIF14
Kinesin-like protein KIF14

1

0

High-throughput

0.458

High

1154125

ITSN1
Intersectin-1

1

0

High-throughput

0.458

High

1161323

HIF1A
Hypoxia-inducible factor 1-alpha

1

0

High-throughput

0.458

High

1161536

IF16
Gamma-interferon-inducible protein 16

1

0

High-throughput

0.458

High

1229562

VIR
Protein virilizer homolog

1

0

High-throughput

0.458

High

1281558

SLN11
Schlafen family member 11

1

0

High-throughput

0.458

High

1323414

SERB1
SERPINE1 mRNA-binding protein 1

1

0

High-throughput

0.458

High

1323424

BAP1
Ubiquitin carboxyl-terminal hydrolase BAP1

1

0

High-throughput

0.458

High

1323427

FBXW7
F-box/WD repeat-containing protein 7

1

0

High-throughput

0.458

High

1323430

DCPS
m7GpppX diphosphatase

1

0

High-throughput

0.458

High

1323431

CHM4C
Charged multivesicular body protein 4c

1

0

High-throughput

0.458

High

1323436

CI072
Guanine nucleotide exchange factor C9orf72

1

0

High-throughput

0.458

High

1323438

ZN363
RING finger and CHY zinc finger domain-containing protein 1

1

0

High-throughput

0.458

High

1323440

RUFY1
RUN and FYVE domain-containing protein 1

1

0

High-throughput

0.458

High

1323451

PINK1
Serine/threonine-protein kinase PINK1, mitochondrial

1

0

High-throughput

0.458

High

1323453

ACE2
Angiotensin-converting enzyme 2

1

0

High-throughput

0.458

High

1323457

AICDA
Single-stranded DNA cytosine deaminase

1

0

Small-scale

0.458

High

1323459

CCDC8
Coiled-coil domain-containing protein 8

1

0

High-throughput

0.458

High

1323463

EGLN3
Prolyl hydroxylase EGLN3

1

0

High-throughput

0.458

High

1323467

PIDD1
p53-induced death domain-containing protein 1

1

0

Small-scale

0.458

High

1323471

FBX6
F-box only protein 6

1

0

High-throughput

0.458

High

1323472

TOM22
Mitochondrial import receptor subunit TOM22 homolog

1

0

High-throughput

0.458

High

1323476

TLS1
Splicing factor C9orf78

1

0

High-throughput

0.458

High

1323478

KCMF1
E3 ubiquitin-protein ligase KCMF1

1

0

Small-scale

0.458

High

1323481

TES
Testin

1

0

High-throughput

0.458

High

1323486

GSTK1
Glutathione S-transferase kappa 1

1

0

High-throughput

0.458

High

1323487

AAKB1
5'-AMP-activated protein kinase subunit beta-1

1

0

High-throughput

0.458

High

465002

SP1
Transcription factor Sp1

1

1

High-throughput

0.457

High

1323420

SP7
Transcription factor Sp7

1

1

High-throughput

0.457

High

188933

TMPS2
Transmembrane protease serine 2

1

1

High-throughput

0.437

High

277376

TP4A3
Protein tyrosine phosphatase type IVA 3

1

3

High-throughput

0.437

High

302894

CIAO1
Probable cytosolic iron-sulfur protein assembly protein CIAO1

1

1

High-throughput

0.437

High

412244

NTRK1
High affinity nerve growth factor receptor

1

3

High-throughput

0.437

High

430124

JUN
Transcription factor Jun

1

1

High-throughput

0.437

High

606911

CEBPB
CCAAT/enhancer-binding protein beta

1

2

High-throughput

0.437

High

650291

FGFR3
Fibroblast growth factor receptor 3

1

7

High-throughput

0.437

High

720274

UFO
Tyrosine-protein kinase receptor UFO

1

5

High-throughput

0.437

High

777721

VGFR3
Vascular endothelial growth factor receptor 3

1

5

High-throughput

0.437

High

778080

VGFR2
Vascular endothelial growth factor receptor 2

1

5

High-throughput

0.437

High

787047

FLT3
Receptor-type tyrosine-protein kinase FLT3

1

5

High-throughput

0.437

High

1034176

ROR1
Inactive tyrosine-protein kinase transmembrane receptor ROR1

1

7

High-throughput

0.437

High

1088194

MERTK
Tyrosine-protein kinase Mer

1

5

High-throughput

0.437

High

1147636

TOM20
Mitochondrial import receptor subunit TOM20 homolog

1

1

High-throughput

0.437

High

1254603

TRI67
Tripartite motif-containing protein 67

1

2

High-throughput

0.437

High

1286828

TM11B
Transmembrane protease serine 11B

1

1

High-throughput

0.437

High

1323407

RHG24
Rho GTPase-activating protein 24

1

1

High-throughput

0.437

High

1323439

LMTK3
Serine/threonine-protein kinase LMTK3

1

8

High-throughput

0.437

High

1323443

RING2
E3 ubiquitin-protein ligase RING2

1

2

High-throughput

0.437

High

1323456

TRI55
Tripartite motif-containing protein 55

1

1

High-throughput

0.437

High

1323462

PKHA4
Pleckstrin homology domain-containing family A member 4

1

2

High-throughput

0.437

High

1323470

SIR7
NAD-dependent protein deacetylase sirtuin-7

1

1

High-throughput

0.437

High

664886

RAE1
Rab proteins geranylgeranyltransferase component A 1

1

0

High-throughput

0.426

High

911637

NCBP2
Nuclear cap-binding protein subunit 2

1

0

High-throughput

0.426

High

1209377

LRRK2
Leucine-rich repeat serine/threonine-protein kinase 2

1

0

High-throughput

0.426

High

1323413

MFSD9
Major facilitator superfamily domain-containing protein 9

1

0

High-throughput

0.426

High

1323419

S7A14
Solute carrier family 7 member 14

1

0

High-throughput

0.426

High

166342

ZNT4
Probable proton-coupled zinc antiporter SLC30A4

1

1

High-throughput

0.407

High

1314303

SLX4
Structure-specific endonuclease subunit SLX4

1

1

High-throughput

0.407

High

1323408

RYBP
RING1 and YY1-binding protein

1

2

High-throughput

0.407

High

1323445

ZNT3
Probable proton-coupled zinc antiporter SLC30A3

1

1

High-throughput

0.407

High

1323447

S39A3
Zinc transporter ZIP3

1

1

High-throughput

0.407

High

1323473

S39A9
Zinc transporter ZIP9

1

1

High-throughput

0.407

High

887018

CEBPA
CCAAT/enhancer-binding protein alpha

1

2

High-throughput

0.373

High

372554

MYC
Myc proto-oncogene protein

3

0

High-throughput

0.345

High

212880

AP5Z1
AP-5 complex subunit zeta-1

2

0

High-throughput

0.316

High

1134786

OPCM
Opioid-binding protein/cell adhesion molecule

2

0

High-throughput

0.316

High

1153694

MPPD2
Metallophosphoesterase MPPED2

2

0

High-throughput

0.316

High

1323474

TM100
Transmembrane protein 100

2

0

High-throughput

0.316

High

619855

VCAM1
Vascular cell adhesion protein 1

2

0

High-throughput

0.298

High

471128

ODPA
Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial

1

0

High-throughput

0.279

Low

1053377

CTSL2
CTD small phosphatase-like protein 2

1

0

High-throughput

0.279

Low

1323437

RBM14
RNA-binding protein 14

1

0

High-throughput

0.279

Low

1323460

UN93B
Protein unc-93 homolog B1

1

0

High-throughput

0.279

Low

1323489

PHLA3
Pleckstrin homology-like domain family A member 3

1

0

High-throughput

0.269

Low

1087453

GRSF1
G-rich sequence factor 1

1

0

Small-scale

0.251

Low

218447

TGON2
Trans-Golgi network integral membrane protein 2

1

0

High-throughput

0.249

Low

247995

NUPR1
Nuclear protein 1

1

0

High-throughput

0.249

Low

260171

BRD4
Bromodomain-containing protein 4

1

0

High-throughput

0.249

Low

294001

CD123
Translation initiation factor eIF2 assembly protein

1

0

High-throughput

0.249

Low

296267

SCO1
Protein SCO1 homolog, mitochondrial

1

0

High-throughput

0.249

Low

359687

DHE3
Glutamate dehydrogenase 1, mitochondrial

1

0

High-throughput

0.249

Low

451412

NFM
Neurofilament medium polypeptide

1

0

High-throughput

0.249

Low

589136

RFA2
Replication protein A 32 kDa subunit

1

0

High-throughput

0.249

Low

695922

RFA1
Replication protein A 70 kDa DNA-binding subunit

1

0

High-throughput

0.249

Low

768629

RFA3
Replication protein A 14 kDa subunit

1

0

High-throughput

0.249

Low

799290

BRCA1
Breast cancer type 1 susceptibility protein

1

0

High-throughput

0.249

Low

851784

NKX21
Homeobox protein Nkx-2.1

1

0

High-throughput

0.249

Low

879264

NR2C2
Nuclear receptor subfamily 2 group C member 2

1

0

High-throughput

0.249

Low

1004814

RNF4
E3 ubiquitin-protein ligase RNF4

1

0

High-throughput

0.249

Low

1121274

TRI14
Tripartite motif-containing protein 14

1

0

High-throughput

0.249

Low

1135734

HAPR1
HUWE1-associated protein modifying stress responses 1

1

0

Small-scale

0.249

Low

1137388

SUZ12
Polycomb protein SUZ12

1

0

High-throughput

0.249

Low

1249010

LMBRL
Protein LMBR1L

1

0

High-throughput

0.249

Low

1276473

PARPT
Protein mono-ADP-ribosyltransferase TIPARP

1

0

High-throughput

0.249

Low

1312396

ASXL1
Polycomb group protein ASXL1

1

0

High-throughput

0.249

Low

1323411

FBXL6
F-box/LRR-repeat protein 6

1

0

High-throughput

0.249

Low

1323421

DOT1L
Histone-lysine N-methyltransferase, H3 lysine-79 specific

1

0

High-throughput

0.249

Low

1323423

CLC4D
C-type lectin domain family 4 member D

1

0

High-throughput

0.249

Low

1323426

ESR2
Estrogen receptor beta

1

0

High-throughput

0.249

Low

1323428

CK052
Uncharacterized protein C11orf52

1

0

High-throughput

0.249

Low

1323435

COX14
Cytochrome c oxidase assembly protein COX14

1

0

High-throughput

0.249

Low

1323446

OVOL2
Transcription factor Ovo-like 2

1

0

Small-scale

0.249

Low

1323448

RCAF1
GEL complex subunit OPTI

1

0

High-throughput

0.249

Low

1323458

SPRTN
DNA-dependent metalloprotease SPRTN

1

0

High-throughput

0.249

Low

1323461

SENP3
Sentrin-specific protease 3

1

0

Small-scale

0.249

Low

1323475

AKIP
Small ribosomal subunit protein mS38

1

0

High-throughput

0.249

Low

1323484

HECD1
E3 ubiquitin-protein ligase HECTD1

1

0

High-throughput

0.249

Low

1323488

TRRAP
Transformation/transcription domain-associated protein

1

0

High-throughput

0.249

Low

1080

SIM26
Small integral membrane protein 26

1

0

High-throughput

0.232

Low

652215

GTR5
Solute carrier family 2, facilitated glucose transporter member 5

1

0

High-throughput

0.232

Low

1323415

MOT11
Monocarboxylate transporter 11

1

0

High-throughput

0.232

Low

1323455

S17A9
Voltage-gated purine nucleotide uniporter SLC17A9

1

0

High-throughput

0.232

Low


Service provided by Combinatics, Japan

Last updated: 11Aug2025