Protein: RPOD
RNA polymerase sigma factor RpoD (Sigma-70)

Gene: RPOD
Organism: Escherichia coli K-12
Interactions: 59
UniProt ID: P00579

Gene Ontology (top 5):
GO:0000345 - cytosolic DNA-directed RNA polymerase complex
GO:0003677 - DNA binding
GO:0005829 - cytosol
GO:0006352 - DNA-templated transcription initiation
GO:0009408 - response to heat

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

340872

RSD
Regulator of sigma D

9

2

Small-scale

0.973

High

340859

RPOC
DNA-directed RNA polymerase subunit beta'

4

7

Small-scale

0.903

High

340860

RPOB
DNA-directed RNA polymerase subunit beta

4

12

Small-scale

0.892

High

340856

RPOA
DNA-directed RNA polymerase subunit alpha

2

4

High-throughput

0.789

High

340839

RPOD
RNA polymerase sigma factor RpoD

2

8

Small-scale

0.785

High

340868

CRP
DNA-binding transcriptional dual regulator CRP

1

3

High-throughput

0.698

High

340873

RHO
Transcription termination factor Rho

3

1

High-throughput

0.657

High

340843

ADA
Bifunctional transcriptional activator/DNA repair enzyme Ada

3

0

Small-scale

0.643

High

340886

RL4
Large ribosomal subunit protein uL4

3

0

High-throughput

0.629

High

340864

FNR
Fumarate and nitrate reduction regulatory protein

1

3

Small-scale

0.618

High

340867

MELR
Melibiose operon regulatory protein

2

8

Small-scale

0.616

High

340844

RHAS
HTH-type transcriptional activator RhaS

3

8

Small-scale

0.601

High

340846

IF2
Translation initiation factor IF-2

2

3

High-throughput

0.588

High

340848

RL7
Large ribosomal subunit protein bL12

2

1

High-throughput

0.588

High

340850

RL1
Large ribosomal subunit protein uL1

2

1

High-throughput

0.588

High

340840

RS6
Small ribosomal subunit protein bS6

2

0

High-throughput

0.585

High

340881

PEPB
Peptidase B

2

0

High-throughput

0.585

High

340852

RS2
Small ribosomal subunit protein uS2

2

1

High-throughput

0.574

High

340849

RL19
Large ribosomal subunit protein bL19

2

0

High-throughput

0.563

High

340851

RL28
Large ribosomal subunit protein bL28

2

0

High-throughput

0.563

High

340858

YEEX
UPF0265 protein YeeX

2

0

High-throughput

0.563

High

340862

G3P1
Glyceraldehyde-3-phosphate dehydrogenase A

2

0

High-throughput

0.563

High

340874

RL21
Large ribosomal subunit protein bL21

2

0

High-throughput

0.563

High

340845

RHAR
HTH-type transcriptional activator RhaR

2

8

Small-scale

0.561

High

340863

ARAC
Arabinose operon regulatory protein

1

8

High-throughput

0.541

High

340877

EFTU1
Elongation factor Tu 1

1

1

High-throughput

0.536

High

340882

GADX
HTH-type transcriptional regulator GadX

1

8

High-throughput

0.536

High

340847

LEXA
LexA repressor

1

0

High-throughput

0.518

High

340878

CHBR
HTH-type transcriptional regulator ChbR

1

0

High-throughput

0.518

High

340884

RAPA
RNA polymerase-associated protein RapA

1

0

High-throughput

0.518

High

340841

RS7
Small ribosomal subunit protein uS7

1

0

High-throughput

0.513

High

340855

RS5
Small ribosomal subunit protein uS5

1

0

High-throughput

0.513

High

340866

DNAG
DNA primase

1

0

High-throughput

0.513

High

340879

NADE
NH(3)-dependent NAD(+) synthetase

1

0

High-throughput

0.513

High

340880

MFD
Transcription-repair-coupling factor

1

0

High-throughput

0.513

High

340888

RL5
Large ribosomal subunit protein uL5

1

0

High-throughput

0.513

High

340889

GMHBB
D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase

1

0

High-throughput

0.513

High

340894

HXPB
Hexitol phosphatase B

1

0

High-throughput

0.513

High

340896

YPDC
Uncharacterized HTH-type transcriptional regulator YpdC

1

8

High-throughput

0.494

High

340853

RS3
Small ribosomal subunit protein uS3

1

1

High-throughput

0.484

High

340854

RS4
Small ribosomal subunit protein uS4

1

1

High-throughput

0.484

High

340870

NUSA
Transcription termination/antitermination protein NusA

1

1

High-throughput

0.484

High

340885

RL2
Large ribosomal subunit protein uL2

1

1

High-throughput

0.484

High

340891

KDGR
HTH-type transcriptional regulator KdgR

1

1

High-throughput

0.479

High

340857

RPOZ
DNA-directed RNA polymerase subunit omega

1

0

High-throughput

0.464

High

340865

ACCA
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha

1

0

High-throughput

0.464

High

340887

RL22
Large ribosomal subunit protein uL22

1

0

High-throughput

0.464

High

340895

HSCC
Chaperone protein HscC

1

0

Small-scale

0.458

High

340890

INSN1
Putative transposase InsN for insertion sequence element IS911A

1

0

High-throughput

0.438

High

340871

POTD
Spermidine/putrescine-binding periplasmic protein

2

0

High-throughput

0.318

High

340875

RS1
Small ribosomal subunit protein bS1

2

0

High-throughput

0.307

High

340876

SECE
Protein translocase subunit SecE

1

0

High-throughput

0.282

High

340883

IDNK
Thermosensitive gluconokinase

1

0

High-throughput

0.282

High

340842

RL15
Large ribosomal subunit protein uL15

1

0

High-throughput

0.279

Low

340861

BLC
Outer membrane lipoprotein Blc

1

0

High-throughput

0.279

Low

340893

ECPB
Probable fimbrial chaperone EcpB

1

0

High-throughput

0.279

Low

340869

CEDA
Cell division activator CedA

1

0

High-throughput

0.253

Low

340892

A2MGH
Putative alpha-2-macroglobulin homolog

1

0

High-throughput

0.232

Low


Service provided by Combinatics, Japan

Last updated: 15 Jul 2024