Protein: CNOT9
CCR4-NOT transcription complex subunit 9 (Cell differentiation protein RQCD1 homolog) (Rcd-1)

Gene: CNOT9
Organism: Homo sapiens
Interactions: 225
UniProt ID: Q92600

Gene Ontology (top 5):
GO:0000289 - nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 - P-body
GO:0003713 - transcription coactivator activity
GO:0005154 - epidermal growth factor receptor binding
GO:0005634 - nucleus

Download interactions: TXT   MITAB-2.5

Interaction Interactor Experiments Homologs Category Interaction
Score
Confidence

64084

CNOT1
CCR4-NOT transcription complex subunit 1

4

3

Small-scale

0.908

High

1215744

RC3H1
Roquin-1

5

2

Small-scale

0.702

High

275458

GA45B
Growth arrest and DNA damage-inducible protein GADD45 beta

4

3

High-throughput

0.698

High

1365385

CNOT7
CCR4-NOT transcription complex subunit 7

4

5

High-throughput

0.694

High

866771

CAZA2
F-actin-capping protein subunit alpha-2

4

1

High-throughput

0.691

High

1365377

CNOT2
CCR4-NOT transcription complex subunit 2

4

7

High-throughput

0.686

High

1365387

CNO11
CCR4-NOT transcription complex subunit 11

5

0

High-throughput

0.682

High

1326422

MINK1
Misshapen-like kinase 1

3

1

High-throughput

0.667

High

1365334

CNO6L
CCR4-NOT transcription complex subunit 6-like

3

5

Small-scale

0.662

High

273908

CNOT3
CCR4-NOT transcription complex subunit 3

3

9

High-throughput

0.650

High

1365320

CNOT9
CCR4-NOT transcription complex subunit 9

1

2

Small-scale

0.647

High

1336803

TNR6A
Trinucleotide repeat-containing gene 6A protein

3

2

Small-scale

0.646

High

1365362

RC3H2
Roquin-2

3

3

Small-scale

0.640

High

867312

CAPZB
F-actin-capping protein subunit beta

3

0

High-throughput

0.634

High

897467

TOB1
Protein Tob1

3

0

Small-scale

0.634

High

949500

NANO2
Nanos homolog 2

2

1

High-throughput

0.628

High

281385

GGYF1
GRB10-interacting GYF protein 1

2

2

Small-scale

0.624

High

1251396

GGYF2
GRB10-interacting GYF protein 2

2

1

Small-scale

0.624

High

1364127

TM131
Transmembrane protein 131

2

2

High-throughput

0.611

High

332174

GA45G
Growth arrest and DNA damage-inducible protein GADD45 gamma

2

3

High-throughput

0.606

High

665278

GA45A
Growth arrest and DNA damage-inducible protein GADD45 alpha

2

3

High-throughput

0.606

High

1315619

IZUM1
Izumo sperm-egg fusion protein 1

2

0

High-throughput

0.602

High

1365390

CNOT6
CCR4-NOT transcription complex subunit 6

2

5

Small-scale

0.601

High

340581

CNOT4
CCR4-NOT transcription complex subunit 4

2

2

Small-scale

0.595

High

1365364

TNR6C
Trinucleotide repeat-containing gene 6C protein

2

3

Small-scale

0.594

High

1123064

FHL2
Four and a half LIM domains protein 2

2

0

High-throughput

0.585

High

1365360

CNO10
CCR4-NOT transcription complex subunit 10

2

0

High-throughput

0.585

High

1365363

GPBL1
Vasculin-like protein 1

2

0

High-throughput

0.585

High

170257

AURKA
Aurora kinase A

2

1

High-throughput

0.584

High

396625

ESR1
Estrogen receptor

2

1

High-throughput

0.571

High

1227176

A16L1
Autophagy-related protein 16-1

2

2

High-throughput

0.571

High

1365353

TB182
182 kDa tankyrase-1-binding protein

2

2

Small-scale

0.571

High

728357

AKT1
RAC-alpha serine/threonine-protein kinase

1

1

Small-scale

0.561

High

324189

CE152
Centrosomal protein of 152 kDa

2

0

High-throughput

0.559

High

1310614

Z3H7A
Zinc finger CCCH domain-containing protein 7A

2

0

High-throughput

0.559

High

1322768

CNTRB
Centrobin

2

0

High-throughput

0.559

High

363652

EGFR
Epidermal growth factor receptor

1

0

Small-scale

0.537

High

1102356

GRB10
Growth factor receptor-bound protein 10

1

0

Small-scale

0.537

High

64806

EPAB2
Embryonic polyadenylate-binding protein 2

1

2

High-throughput

0.536

High

848692

MAGA9
Melanoma-associated antigen 9

1

1

High-throughput

0.536

High

915147

CAZA1
F-actin-capping protein subunit alpha-1

1

1

High-throughput

0.536

High

1347590

UHMK1
Serine/threonine-protein kinase Kist

1

1

High-throughput

0.536

High

1365332

RBM18
Probable RNA-binding protein 18

1

1

High-throughput

0.536

High

302078

SEGN
Secretagogin

1

0

High-throughput

0.513

High

608318

EGLN
Endoglin

1

0

High-throughput

0.513

High

638484

FPR1
fMet-Leu-Phe receptor

1

0

High-throughput

0.513

High

1289116

TRI74
Tripartite motif-containing protein 74

1

0

High-throughput

0.513

High

1310273

HSC20
Iron-sulfur cluster co-chaperone protein HscB

1

0

High-throughput

0.513

High

1365323

THRSP
Thyroid hormone-inducible hepatic protein

1

0

High-throughput

0.513

High

1365324

TANK
TRAF family member-associated NF-kappa-B activator

1

0

High-throughput

0.513

High

173151

XPO1
Exportin-1

1

2

High-throughput

0.479

High

274211

ANR17
Ankyrin repeat domain-containing protein 17

1

1

High-throughput

0.479

High

321862

PCF11
Pre-mRNA cleavage complex 2 protein Pcf11

1

1

High-throughput

0.479

High

372720

MYC
Myc proto-oncogene protein

1

3

High-throughput

0.479

High

519536

MYBB
Myb-related protein B

1

11

High-throughput

0.479

High

668678

APC
Adenomatous polyposis coli protein

1

2

High-throughput

0.479

High

684333

DDX6
Probable ATP-dependent RNA helicase DDX6

1

1

High-throughput

0.479

High

688287

TTP
mRNA decay activator protein ZFP36

1

6

High-throughput

0.479

High

713826

RBMS1
RNA-binding motif, single-stranded-interacting protein 1

1

1

High-throughput

0.479

High

729379

HNRH1
Heterogeneous nuclear ribonucleoprotein H

1

1

High-throughput

0.479

High

833003

ETV6
Transcription factor ETV6

1

1

High-throughput

0.479

High

835719

KPCI
Protein kinase C iota type

1

1

High-throughput

0.479

High

846924

ETV4
ETS translocation variant 4

1

1

High-throughput

0.479

High

875735

PRC2A
Protein PRRC2A

1

3

High-throughput

0.479

High

896276

PEX5
Peroxisomal targeting signal 1 receptor

1

1

High-throughput

0.479

High

1032377

OTUD4
OTU domain-containing protein 4

1

1

High-throughput

0.479

High

1092908

STRN3
Striatin-3

1

2

High-throughput

0.479

High

1107979

SQSTM
Sequestosome-1

1

1

High-throughput

0.479

High

1115864

DYR1A
Dual specificity tyrosine-phosphorylation-regulated kinase 1A

1

1

High-throughput

0.479

High

1122121

UBP2L
Ubiquitin-associated protein 2-like

1

2

High-throughput

0.479

High

1129466

PUM1
Pumilio homolog 1

1

5

High-throughput

0.479

High

1165482

CPEB4
Cytoplasmic polyadenylation element-binding protein 4

1

2

High-throughput

0.479

High

1201688

PAN3
PAN2-PAN3 deadenylation complex subunit PAN3

1

1

High-throughput

0.479

High

1213517

UBAP2
Ubiquitin-associated protein 2

1

3

High-throughput

0.479

High

1251934

LMTK1
Serine/threonine-protein kinase LMTK1

1

2

High-throughput

0.479

High

1280709

YTHD3
YTH domain-containing family protein 3

1

4

High-throughput

0.479

High

1287106

PATL1
Protein PAT1 homolog 1

1

2

High-throughput

0.479

High

1314131

RAVR1
Ribonucleoprotein PTB-binding 1

1

1

High-throughput

0.479

High

1348102

PUM2
Pumilio homolog 2

1

5

High-throughput

0.479

High

1363927

SMG7
Nonsense-mediated mRNA decay factor SMG7

1

1

High-throughput

0.479

High

1365322

ESR2
Estrogen receptor beta

1

1

High-throughput

0.479

High

1365325

RENT1
Regulator of nonsense transcripts 1

1

1

High-throughput

0.479

High

1365326

DAZL
Deleted in azoospermia-like

1

2

High-throughput

0.479

High

1365338

NEK1
Serine/threonine-protein kinase Nek1

1

1

High-throughput

0.479

High

1365339

PASK
PAS domain-containing serine/threonine-protein kinase

1

2

High-throughput

0.479

High

1365340

PSMD1
26S proteasome non-ATPase regulatory subunit 1

1

1

High-throughput

0.479

High

1365343

M3K3
Mitogen-activated protein kinase kinase kinase 3

1

1

High-throughput

0.479

High

1365350

YTHD1
YTH domain-containing family protein 1

1

4

High-throughput

0.479

High

1365351

CPEB1
Cytoplasmic polyadenylation element-binding protein 1

1

1

High-throughput

0.479

High

1365361

AGO3
Protein argonaute-3

1

2

High-throughput

0.479

High

1365378

CEP72
Centrosomal protein of 72 kDa

1

1

High-throughput

0.479

High

1365381

CNOT8
CCR4-NOT transcription complex subunit 8

1

5

High-throughput

0.479

High

1365384

DDX20
Probable ATP-dependent RNA helicase DDX20

1

2

High-throughput

0.479

High

1365386

AGO2
Protein argonaute-2

1

2

High-throughput

0.479

High

1365388

AGO1
Protein argonaute-1

1

2

High-throughput

0.479

High

1365394

TNR6B
Trinucleotide repeat-containing gene 6B protein

1

2

High-throughput

0.479

High

1365395

SMG5
Nonsense-mediated mRNA decay factor SMG5

1

1

High-throughput

0.479

High

1365396

TBD2B
TBC1 domain family member 2B

1

1

High-throughput

0.479

High

1365401

R3HD2
R3H domain-containing protein 2

1

1

High-throughput

0.479

High

1365403

PRC2C
Protein PRRC2C

1

3

High-throughput

0.479

High

1365404

YTHD2
YTH domain-containing family protein 2

1

4

High-throughput

0.479

High

1365406

MAGD1
Melanoma-associated antigen D1

1

1

High-throughput

0.479

High

135970

P3C2A
Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha

1

0

High-throughput

0.458

High

175144

SC16A
Protein transport protein Sec16A

1

0

High-throughput

0.458

High

176527

GRRE1
Granule associated Rac and RHOG effector protein 1

1

0

High-throughput

0.458

High

213213

CP110
Centriolar coiled-coil protein of 110 kDa

1

0

High-throughput

0.458

High

215338

TXNL1
Thioredoxin-like protein 1

1

0

High-throughput

0.458

High

242460

PRKN
E3 ubiquitin-protein ligase parkin

1

0

High-throughput

0.458

High

252131

IF4E2
Eukaryotic translation initiation factor 4E type 2

1

0

High-throughput

0.458

High

290094

OFD1
Centriole and centriolar satellite protein OFD1

1

0

High-throughput

0.458

High

412357

NTRK1
High affinity nerve growth factor receptor

1

0

High-throughput

0.458

High

451040

LDHB
L-lactate dehydrogenase B chain

1

0

High-throughput

0.458

High

517488

GLI2
Zinc finger protein GLI2

1

0

High-throughput

0.458

High

550387

PABP1
Polyadenylate-binding protein 1

1

0

High-throughput

0.458

High

589297

RFA2
Replication protein A 32 kDa subunit

1

0

High-throughput

0.458

High

696086

RFA1
Replication protein A 70 kDa DNA-binding subunit

1

0

High-throughput

0.458

High

755611

TTK
Dual specificity protein kinase TTK

1

0

High-throughput

0.458

High

831151

CCNF
Cyclin-F

1

0

High-throughput

0.458

High

897917

CDK9
Cyclin-dependent kinase 9

1

0

High-throughput

0.458

High

906575

PSMD7
26S proteasome non-ATPase regulatory subunit 7

1

0

High-throughput

0.458

High

934933

TERA
Transitional endoplasmic reticulum ATPase

1

0

High-throughput

0.458

High

938252

SEC13
Protein SEC13 homolog

1

0

High-throughput

0.458

High

941507

CTBP2
C-terminal-binding protein 2

1

0

High-throughput

0.458

High

1121287

TRI14
Tripartite motif-containing protein 14

1

0

High-throughput

0.458

High

1126490

CAPR1
Caprin-1

1

0

High-throughput

0.458

High

1128794

NBR1
Next to BRCA1 gene 1 protein

1

0

High-throughput

0.458

High

1138452

U5S1
116 kDa U5 small nuclear ribonucleoprotein component

1

0

High-throughput

0.458

High

1143450

PCM1
Pericentriolar material 1 protein

1

0

High-throughput

0.458

High

1177981

MOONR
Protein moonraker

1

0

High-throughput

0.458

High

1197532

PAN2
PAN2-PAN3 deadenylation complex catalytic subunit PAN2

1

0

High-throughput

0.458

High

1208561

SMAG2
Protein Smaug homolog 2

1

0

High-throughput

0.458

High

1212640

RBM20
RNA-binding protein 20

1

0

High-throughput

0.458

High

1217484

CE350
Centrosome-associated protein 350

1

0

High-throughput

0.458

High

1217896

BRE1A
E3 ubiquitin-protein ligase BRE1A

1

0

High-throughput

0.458

High

1218202

ZN318
Zinc finger protein 318

1

0

High-throughput

0.458

High

1228556

HAUS3
HAUS augmin-like complex subunit 3

1

0

High-throughput

0.458

High

1241562

CEP85
Centrosomal protein of 85 kDa

1

0

High-throughput

0.458

High

1252354

MEX3B
RNA-binding protein MEX3B

1

0

High-throughput

0.458

High

1271762

MEPCE
7SK snRNA methylphosphate capping enzyme

1

0

High-throughput

0.458

High

1278420

HAUS6
HAUS augmin-like complex subunit 6

1

0

High-throughput

0.458

High

1288548

ZN598
E3 ubiquitin-protein ligase ZNF598

1

0

High-throughput

0.458

High

1289177

N4BP2
NEDD4-binding protein 2

1

0

High-throughput

0.458

High

1309467

CEP97
Centrosomal protein of 97 kDa

1

0

High-throughput

0.458

High

1310095

MGAP
MAX gene-associated protein

1

0

High-throughput

0.458

High

1327702

MACOI
Macoilin

1

0

High-throughput

0.458

High

1336259

LS14A
Protein LSM14 homolog A

1

0

High-throughput

0.458

High

1350162

ALMS1
Centrosome-associated protein ALMS1

1

0

High-throughput

0.458

High

1353554

DI3L1
DIS3-like exonuclease 1

1

0

High-throughput

0.458

High

1356302

SMAP2
Stromal membrane-associated protein 2

1

0

High-throughput

0.458

High

1365327

DVL3
Segment polarity protein dishevelled homolog DVL-3

1

0

High-throughput

0.458

High

1365328

TTC17
Tetratricopeptide repeat protein 17

1

0

High-throughput

0.458

High

1365330

HAUS1
HAUS augmin-like complex subunit 1

1

0

High-throughput

0.458

High

1365333

FUBP3
Far upstream element-binding protein 3

1

0

High-throughput

0.458

High

1365341

MPP9
M-phase phosphoprotein 9

1

0

High-throughput

0.458

High

1365342

ATX2
Ataxin-2

1

0

High-throughput

0.458

High

1365344

HAUS7
HAUS augmin-like complex subunit 7

1

0

High-throughput

0.458

High

1365345

PAIP2
Polyadenylate-binding protein-interacting protein 2

1

0

High-throughput

0.458

High

1365346

LZTS2
Leucine zipper putative tumor suppressor 2

1

0

High-throughput

0.458

High

1365349

PCGF6
Polycomb group RING finger protein 6

1

0

High-throughput

0.458

High

1365354

MKRN2
E3 ubiquitin-protein ligase makorin-2

1

0

High-throughput

0.458

High

1365355

PAIP1
Polyadenylate-binding protein-interacting protein 1

1

0

High-throughput

0.458

High

1365356

GCP60
Golgi resident protein GCP60

1

0

High-throughput

0.458

High

1365358

HAUS4
HAUS augmin-like complex subunit 4

1

0

High-throughput

0.458

High

1365359

TDRD3
Tudor domain-containing protein 3

1

0

High-throughput

0.458

High

1365367

BIRC6
Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6

1

0

High-throughput

0.458

High

1365368

4ET
Eukaryotic translation initiation factor 4E transporter

1

0

High-throughput

0.458

High

1365369

ST7
Suppressor of tumorigenicity 7 protein

1

0

High-throughput

0.458

High

1365371

RAD18
E3 ubiquitin-protein ligase RAD18

1

0

High-throughput

0.458

High

1365372

SALL1
Sal-like protein 1

1

0

High-throughput

0.458

High

1365373

DIAP3
Protein diaphanous homolog 3

1

0

High-throughput

0.458

High

1365374

HAUS2
HAUS augmin-like complex subunit 2

1

0

High-throughput

0.458

High

1365375

F120C
Constitutive coactivator of PPAR-gamma-like protein 2

1

0

High-throughput

0.458

High

1365380

HDC
Headcase protein homolog

1

0

High-throughput

0.458

High

1365382

ZRAN1
Ubiquitin thioesterase ZRANB1

1

0

High-throughput

0.458

High

1365383

TBK1
Serine/threonine-protein kinase TBK1

1

0

High-throughput

0.458

High

1365389

PKHG1
Pleckstrin homology domain-containing family G member 1

1

0

High-throughput

0.458

High

1365391

PSD13
26S proteasome non-ATPase regulatory subunit 13

1

0

High-throughput

0.458

High

1365392

CP131
Centrosomal protein of 131 kDa

1

0

High-throughput

0.458

High

1365393

SCAF8
SR-related and CTD-associated factor 8

1

0

High-throughput

0.458

High

1365397

RUVB2
RuvB-like 2

1

0

High-throughput

0.458

High

1365398

FBW1A
F-box/WD repeat-containing protein 1A

1

0

High-throughput

0.458

High

1365399

ADIP
Afadin- and alpha-actinin-binding protein

1

0

High-throughput

0.458

High

1365400

NINL
Ninein-like protein

1

0

High-throughput

0.458

High

1365402

MARF1
Meiosis regulator and mRNA stability factor 1

1

0

High-throughput

0.458

High

1365407

S23IP
SEC23-interacting protein

1

0

High-throughput

0.458

High

61127

T131L
Transmembrane protein 131-like

1

1

High-throughput

0.437

High

348178

M4K4
Mitogen-activated protein kinase kinase kinase kinase 4

1

3

High-throughput

0.437

High

1206506

PRC2B
Protein PRRC2B

1

2

High-throughput

0.437

High

1254873

TRI67
Tripartite motif-containing protein 67

1

1

High-throughput

0.437

High

1311356

ANKH1
Ankyrin repeat and KH domain-containing protein 1

1

1

High-throughput

0.437

High

1365352

UNK
RING finger protein unkempt homolog

1

6

High-throughput

0.437

High

1365357

PKHA4
Pleckstrin homology domain-containing family A member 4

1

1

High-throughput

0.437

High

1365366

ALG13
UDP-N-acetylglucosamine transferase subunit ALG13

1

1

High-throughput

0.437

High

1365370

STRN4
Striatin-4

1

1

High-throughput

0.437

High

530148

TAU
Microtubule-associated protein tau

1

0

High-throughput

0.426

High

1341078

INADL
InaD-like protein

1

0

High-throughput

0.426

High

480382

MMP7
Matrilysin

3

0

High-throughput

0.347

High

1325714

RIBC1
RIB43A-like with coiled-coils protein 1

3

0

High-throughput

0.345

High

1365379

WRP73
WD repeat-containing protein WRAP73

3

0

High-throughput

0.339

High

1365347

TX13A
Testis-expressed protein 13A

2

0

High-throughput

0.328

High

1365405

PCDA3
Protocadherin alpha-3

2

0

High-throughput

0.328

High

1219865

OBI1
ORC ubiquitin ligase 1

2

0

Small-scale

0.325

High

1131207

MESD
LRP chaperone MESD

2

0

High-throughput

0.316

High

1365336

FACOS
FANCD2 opposite strand protein

2

0

High-throughput

0.313

High

1192023

AX2R
Annexin-2 receptor

1

0

High-throughput

0.279

Low

1232105

VASN
Vasorin

1

0

High-throughput

0.279

Low

208545

PJA2
E3 ubiquitin-protein ligase Praja-2

1

0

High-throughput

0.249

Low

768783

RFA3
Replication protein A 14 kDa subunit

1

0

High-throughput

0.249

Low

1004288

F193A
Protein FAM193A

1

0

High-throughput

0.249

Low

1151454

JHD2C
Probable JmjC domain-containing histone demethylation protein 2C

1

0

High-throughput

0.249

Low

1169023

CSPP1
Centrosome and spindle pole-associated protein 1

1

0

High-throughput

0.249

Low

1217599

RPRD2
Regulation of nuclear pre-mRNA domain-containing protein 2

1

0

High-throughput

0.249

Low

1248165

SAS6
Spindle assembly abnormal protein 6 homolog

1

0

High-throughput

0.249

Low

1333831

TTC13
Tetratricopeptide repeat protein 13

1

0

High-throughput

0.249

Low

1336200

RN214
RING finger protein 214

1

0

High-throughput

0.249

Low

1356617

CT55
Cancer/testis antigen 55

1

0

High-throughput

0.249

Low

1365321

K0232
Uncharacterized protein KIAA0232

1

0

High-throughput

0.249

Low

1365329

ENTR1
Endosome-associated-trafficking regulator 1

1

0

High-throughput

0.249

Low

1365331

NRBF2
Nuclear receptor-binding factor 2

1

0

High-throughput

0.249

Low

1365335

CC138
Coiled-coil domain-containing protein 138

1

0

High-throughput

0.249

Low

1365337

RN157
E3 ubiquitin ligase RNF157

1

0

Small-scale

0.249

Low

1365348

K1671
Uncharacterized protein KIAA1671

1

0

High-throughput

0.249

Low

1365365

Q9HCK3
KIAA1569 protein

1

0

High-throughput

0.249

Low

1365376

PSD3
PH and SEC7 domain-containing protein 3

1

0

High-throughput

0.249

Low


Service provided by Combinatics, Japan

Last updated: 11Aug2025